RNA id: TU321790


Basic Information

Item Value
RNA id TU321790
length 328
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G283914
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 273932 ~ 274259 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGACAGCAGATACTGAATAAGGACAACTCAGGCACTTTTTACTTCAACTGCGTCTGACAGAAGAATTTATTTTTCCGAGGTGAGTCTTTACGAATAAATAGCTTTTTTAAAAATGTATAAAATAAAGTTAACTTTGCAAAGACGCTAAACCTTTTTTTATTGTTATGTTTACGTTAGTGCTGGTGGCCGTTAGAAAGTTGACATGGCAACCGGGAAAACATTAAAGCTGCTGGAGAGGACAGCTTCGACATTTCACAGTGTTTCTCATCAGTTTTATAGCAATAAAGTTCAACAACTGCGTCAGATTGGTTAAGTAACATTACCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321767 lncRNA downstream 21741 251841 ~ 252191 (-) True G283896
TU321714 lncRNA downstream 30026 240602 ~ 243906 (-) True G283845
TU321759 lncRNA downstream 41638 231852 ~ 232294 (-) True G283888
TU321752 lncRNA downstream 49697 223420 ~ 224235 (-) True G283881
TU321744 lncRNA downstream 71558 201959 ~ 202374 (-) True G283873
TU321794 lncRNA upstream 1935 276194 ~ 277837 (-) True G283916
TU322057 lncRNA upstream 6756 281015 ~ 281462 (-) False CI01000072_00281180_00284855
TU322055 lncRNA upstream 9364 283623 ~ 284279 (-) False CI01000072_00281180_00284855
TU322053 lncRNA upstream 10612 286650 ~ 287002 (-) True G284126
TU322046 lncRNA upstream 16029 290288 ~ 297252 (-) True G284124
CI01000072_00270378_00272531.mRNA mRNA downstream 1255 270187 ~ 272677 (-) True CI01000072_00270378_00272531
CI01000072_00235619_00238502.mRNA mRNA downstream 35430 234869 ~ 238502 (-) True CI01000072_00235619_00238502
CI01000072_00208491_00215135.mRNA mRNA downstream 58797 207655 ~ 215135 (-) True CI01000072_00208491_00215135
CI01000072_00178958_00188889.mRNA mRNA downstream 85043 178879 ~ 188889 (-) True CI01000072_00178958_00188889
CI01000072_00153905_00173611.mRNA mRNA downstream 99742 153335 ~ 174190 (-) True CI01000072_00153905_00173611
CI01000072_00281180_00284855.mRNA mRNA upstream 6444 280703 ~ 285182 (-) False CI01000072_00281180_00284855
CI01000072_00326699_00334092.mRNA mRNA upstream 51076 325335 ~ 334595 (-) True CI01000072_00326699_00334092
CI01000072_00353460_00366394.mRNA mRNA upstream 79007 353266 ~ 366583 (-) True CI01000072_00353460_00366394
CI01000072_00384630_00389183.mRNA mRNA upstream 109650 383909 ~ 389321 (-) True CI01000072_00384630_00389183
CI01000072_00390666_00393574.mRNA mRNA upstream 116195 390454 ~ 393912 (-) True CI01000072_00390666_00393574
TU322054 other upstream 9364 283623 ~ 283764 (-) True G284127
TU323625 other upstream 1061248 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 1319852 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 1319852 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 1731292 2005551 ~ 2008309 (-) True G285766

Expression Profile