RNA id: TU321794



Basic Information


Item Value
RNA id TU321794
length 1617
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G283916
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 276194 ~ 277837 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGCGTGCCGAAAGGTGAATGCTACAACAGAAACTAACCCTTAACCCTATCCCTAACCTTAACAGACAGCTTTCACTACCAATTATAAAGACCTTTCTCCAACTTTTAACATGTCCCAACCTTTCTCCACACCCAATGCTCCAACATGGCATGACCCACACCTGCAAAAACACACTAAAGCAGGTTTTGTCATCAAAGCATGCAATCTGAAATTTGAAATCCAATTCATAATTTAGGATTCTTATCATCTTAACCAAAACTGACCCATAAATGCGACCCAAACAAAGCCTAACAGACTGAAGAGCAACTTCAACAACTGCTGTTAACATATTCAAAAGCAATGGAAAAACACATCTGAACTGTACATGCTATATAGTTAGATTATAAGTCATATTCATATTACACTGTAGAAGCCAACACTGTAGTAATGTACAGAACATTTTATATTAATATATGAATTCACAGTTCTTCACCTTATTTATTGTTTGTGTACTGATGTGTAATATTTTACACTGCCTGTACTCATACTATAGTCAGAAAGCAAATAAGAATTCCATTCCAGATGTTTATTTTTTTGCAATAAAGTACCCTTCACATTAGCATACATTCAATGTGAAGTTATTAACATTACAACAGAGCTAAATATTTTGGGATACTGATCCATTCATAGTTTGAACAAAAACATACATTATTTACTTAATTTAATACATTTAATAAATTATTTAAATTAATTTACTGTACATGAAAAGGTCACGGTATTATGGAACACAACATTGACATTTCTGAGAAGTGTCTTAGATACAAATTCCACTGGAAATACATCCAGAGACGCATGGACATTCTGTACAAATGTAATTTGGTTAGAAATGTATTAATTACCTAATAACTAGAACAGAGAATGTTTAAAGTTAAAAAGCAAAACAATTTTTAAACATCTAAAAATCTAAACAGCACTGAAACAACAAATATAAACATCAATATTTTGAGAACTTTCCAAATGGATGACAATGTGTAATAGACTAGCTATGCAAAGAGCTAAAACACTGGTCTGAAACTCAGTTCCTAGAGGGCCACAGCTCTGAACAGTTTTGCTCCAACCCTAATCAAACACACCTGATCCAGCTAATCAAGGGGCACATTCAAGCTTAAACCGGTGCGCAAAGTTTTGCTACGGTTTCCGGGTTGAACACCATATTAAACAAAATAGACATGTTTCCTGGAAATGGTGTGCAACGAGGTTTGAGATACGTTTTCTCTTGTTTGGTGGGTGTGTCAAAATGCCCAATCAGCATCAACATGTATATAAACCACGCGGTATTATAGAGACAGCTCACACAATGGGTCCAAGTAAAGTCGTTTACAAATGTGTCCGCTGGAGCTCGGTATATGCAACAACTGAAGATATTAGAAGACATGTTTGTCATAAGAGTTTTATAGTAAAAATATAGCATATCTATTCTTCAAAAAGAACACAAAGAATGGCCTTCTCAGCTGCCATAGTTGCAACTCTTGCGTCATCAGAACAGGGTGTTCAGCGTACCACCGTTTCCATTTAAAAAACGTTTTGCAACGTTTTGTCGGGGCTGAACGCAGCCCAGGTCTTCAGCGTTACTACCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU321790 lncRNA downstream 1935 273932 ~ 274259 (-) True G283914
TU321767 lncRNA downstream 24003 251841 ~ 252191 (-) True G283896
TU321714 lncRNA downstream 32288 240602 ~ 243906 (-) True G283845
TU321759 lncRNA downstream 43900 231852 ~ 232294 (-) True G283888
TU321752 lncRNA downstream 51959 223420 ~ 224235 (-) True G283881
TU322057 lncRNA upstream 3178 281015 ~ 281462 (-) False CI01000072_00281180_00284855
TU322055 lncRNA upstream 5786 283623 ~ 284279 (-) False CI01000072_00281180_00284855
TU322053 lncRNA upstream 7034 286650 ~ 287002 (-) True G284126
TU322046 lncRNA upstream 12451 290288 ~ 297252 (-) True G284124
TU322072 lncRNA upstream 44995 322832 ~ 352560 (-) True G284142
CI01000072_00270378_00272531.mRNA mRNA downstream 3517 270187 ~ 272677 (-) True CI01000072_00270378_00272531
CI01000072_00235619_00238502.mRNA mRNA downstream 37692 234869 ~ 238502 (-) True CI01000072_00235619_00238502
CI01000072_00208491_00215135.mRNA mRNA downstream 61059 207655 ~ 215135 (-) True CI01000072_00208491_00215135
CI01000072_00178958_00188889.mRNA mRNA downstream 87305 178879 ~ 188889 (-) True CI01000072_00178958_00188889
CI01000072_00153905_00173611.mRNA mRNA downstream 102004 153335 ~ 174190 (-) True CI01000072_00153905_00173611
CI01000072_00281180_00284855.mRNA mRNA upstream 2866 280703 ~ 285182 (-) False CI01000072_00281180_00284855
CI01000072_00326699_00334092.mRNA mRNA upstream 47498 325335 ~ 334595 (-) True CI01000072_00326699_00334092
CI01000072_00353460_00366394.mRNA mRNA upstream 75429 353266 ~ 366583 (-) True CI01000072_00353460_00366394
CI01000072_00384630_00389183.mRNA mRNA upstream 106072 383909 ~ 389321 (-) True CI01000072_00384630_00389183
CI01000072_00390666_00393574.mRNA mRNA upstream 112617 390454 ~ 393912 (-) True CI01000072_00390666_00393574
TU322054 other upstream 5786 283623 ~ 283764 (-) True G284127
TU323625 other upstream 1057670 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 1316274 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 1316274 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 1727714 2005551 ~ 2008309 (-) True G285766

Expression Profile