RNA id: TU322072



Basic Information


Item Value
RNA id TU322072
length 1539
lncRNA type read_through
GC content 0.37
exon number 2
gene id G284142
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 322832 ~ 352560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTACAATAATAATGAACGTAAACTTACAGAGCTCTAGTTGTACCACCTGACTGCTACAGATTCATTTCAGCATTGATAGTGTTGACACAGAAACGCATAATGACGTGTGAAGTCTGCGCGAGCAGGAGCACAGAGGTATGGAAATACATATGCTGACAGGCAGGAAGCACATTGTATCATTGCATGCAATGATTGGACGAACATTTTTTGATCCTAAGACTTCCACAAAAGATATATGTACATGATTTAATATTTAGACCACTATTATTATTTGCTGTCAGGATGTGAAGAGAGTTTCAACCAGTATAACAAAATGTGTTCATAGAAAAATTGCCTACCCTACCTTTAACATAACTTAAACTGCACAAACCTGTAAAAACAGAAACTATTTTTATGGAGCTACAGTATTTTTCACGCCTGAGTAACCTACTGCAAACCATTTATAAAAAAAAAATGAAAAAATTAGTGTTTCATAAGGCTTTTTTTCAATAGTTCCAACTGATAATGCTATAATGCTAGATTATCTAGTATTATCTATCATATAAACAGAGAATGACTATGCTTTATGTCACAAATACGATTGATAATGCAGAAATCGATTTAACTTCCTGAGTTACAGAAATGTCCCACACAATTCTGGGAACATGGTCAGCACATAGTATGATTACTATACTGCAATTGAGGAATATTCAGTGTTATTTAGTGCCAAAAATGCTGTCTACAGATATAAGCTGTTAATAACTTAGAATCTTTAAGGTGCATCACATTTATTGTTGTTTGGGGAACTCCAGTCATTACAACAGGAATCCACGCAATTGCAAATTTTGTGTGAGGGCGAAAGATTTCCCTTTGCAGATTTGACAACGGGTTTCAAGTCAGCAGAATGCTGCTTTGTTTGAAAGTGACTCCGTCTGAGCTGTGTATCATACATCGCCATTGAAAGGTGACAGACCTATTTTGGTCTGTCCCTAATTTCCCTAATGCAACCGCACCTTTAAAGGGTTAGTTCATCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCGTGTCGTTCCAAACCCACAATCATGTTTCTTCTGAAAATTTTGGACTAAACCACTTCGTTTTACATAGTTGTCAATGGAGGTACAGAAATCATTCAGATTTCTTTAAAAAGATCTTCATTTGTGTTCCGAAGATGAACGAAAGTCTTGTGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAAGTTCTACTGCATCTCTGAGTAAGTTACATTTATATCTTTTTCTCCCAAGAAAATTCAACAGTAATCTATCTAGACCAGCTACATGCATACAACCAAAGGAAACACTGGCCTCTGAGGGGTAACAGGTGTGTTCTGGTTACATGATGGCAATTACTTAATGCAACATTATTCCTTTTCTGGCTCTTTTTTGTCTGTTTTTGCAGCATCTGGTTGTTCTTGGCTGGGGCATGCCTTGAGGAAGCGCAGAATCTTGTTGATAGTGGCTTCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322046 lncRNA downstream 25580 290288 ~ 297252 (-) True G284124
TU322053 lncRNA downstream 35830 286650 ~ 287002 (-) True G284126
TU322055 lncRNA downstream 38553 283623 ~ 284279 (-) False CI01000072_00281180_00284855
TU322057 lncRNA downstream 41370 281015 ~ 281462 (-) False CI01000072_00281180_00284855
TU321794 lncRNA downstream 44995 276194 ~ 277837 (-) True G283916
TU322096 lncRNA upstream 55872 408432 ~ 408826 (-) True G284162
TU322103 lncRNA upstream 72598 425158 ~ 425367 (-) True G284169
TU322166 lncRNA upstream 268355 620915 ~ 621838 (-) True G284232
TU322165 lncRNA upstream 269478 622038 ~ 631366 (-) True G284231
TU322168 lncRNA upstream 281185 633745 ~ 635345 (-) True G284234
CI01000072_00281180_00284855.mRNA mRNA downstream 37650 280703 ~ 285182 (-) False CI01000072_00281180_00284855
CI01000072_00270378_00272531.mRNA mRNA downstream 50155 270187 ~ 272677 (-) True CI01000072_00270378_00272531
CI01000072_00235619_00238502.mRNA mRNA downstream 84330 234869 ~ 238502 (-) True CI01000072_00235619_00238502
CI01000072_00208491_00215135.mRNA mRNA downstream 107697 207655 ~ 215135 (-) True CI01000072_00208491_00215135
CI01000072_00178958_00188889.mRNA mRNA downstream 133943 178879 ~ 188889 (-) True CI01000072_00178958_00188889
CI01000072_00353460_00366394.mRNA mRNA upstream 706 353266 ~ 366583 (-) True CI01000072_00353460_00366394
CI01000072_00384630_00389183.mRNA mRNA upstream 31349 383909 ~ 389321 (-) True CI01000072_00384630_00389183
CI01000072_00390666_00393574.mRNA mRNA upstream 37894 390454 ~ 393912 (-) True CI01000072_00390666_00393574
CI01000072_00395219_00398674.mRNA mRNA upstream 42636 395196 ~ 398744 (-) True CI01000072_00395219_00398674
CI01000072_00672699_00753165.mRNA mRNA upstream 319666 672226 ~ 753271 (-) True CI01000072_00672699_00753165
TU322054 other downstream 38553 283623 ~ 283764 (-) True G284127
TU323625 other upstream 982947 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 1241551 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 1241551 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 1652991 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 1815488 2168048 ~ 2170658 (-) True G285752

Expression Profile