RNA id: TU322230


Basic Information

Item Value
RNA id TU322230
length 306
lncRNA type intronic
GC content 0.38
exon number 1
gene id G284295
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 742732 ~ 743037 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAAAATGAATTATATCTCATGTTTAACCACTTTAAGAGACAGCAGCAAATCCCTGAAGCACTGGCCGAGATGAAGCTGTTTTTGGCGGGTACACAAGCACTAAATGGCGTTGACGGCCTGGAGCTTGCATCTCTGAAAACGTCTAAACAAATTGTAAAATAGGCGCTGATTAAATATGAGTCACATATTTCAGGTCTAAACAACTACACTCTCGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAACACAGTTCGTGGTATAACAAGTGTAGTATTTGTAAAAAATACGGTGGATTTGCTTGGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322214 lncRNA downstream 26945 712486 ~ 715787 (-) True G284279
TU322206 lncRNA downstream 45318 697150 ~ 697414 (-) True G284272
TU322180 lncRNA downstream 80936 661456 ~ 661796 (-) True G284246
TU322174 lncRNA downstream 93560 648952 ~ 649172 (-) True G284240
TU322173 lncRNA downstream 96540 645960 ~ 646192 (-) True G284239
TU322234 lncRNA upstream 7363 750400 ~ 750816 (-) True G284299
TU323561 lncRNA upstream 60082 803119 ~ 803431 (-) True G285471
TU323572 lncRNA upstream 77778 820815 ~ 821032 (-) True G285482
TU323543 lncRNA upstream 258814 1001851 ~ 1006584 (-) True G285454
TU323591 lncRNA upstream 401030 1144067 ~ 1144334 (-) True G285501
CI01000072_00395219_00398674.mRNA mRNA downstream 343988 395196 ~ 398744 (-) True CI01000072_00395219_00398674
CI01000072_00390666_00393574.mRNA mRNA downstream 348820 390454 ~ 393912 (-) True CI01000072_00390666_00393574
CI01000072_00384630_00389183.mRNA mRNA downstream 353411 383909 ~ 389321 (-) True CI01000072_00384630_00389183
CI01000072_00353460_00366394.mRNA mRNA downstream 376149 353266 ~ 366583 (-) True CI01000072_00353460_00366394
CI01000072_00326699_00334092.mRNA mRNA downstream 408137 325335 ~ 334595 (-) True CI01000072_00326699_00334092
CI01000072_00812929_00817837.mRNA mRNA upstream 69630 812667 ~ 817868 (-) True CI01000072_00812929_00817837
CI01000072_00824625_00842268.mRNA mRNA upstream 80057 823094 ~ 842873 (-) True CI01000072_00824625_00842268
CI01000072_00859483_00865880.mRNA mRNA upstream 116152 859189 ~ 865880 (-) True CI01000072_00859483_00865880
CI01000072_00894580_01108625.mRNA mRNA upstream 151543 894580 ~ 1108625 (-) True CI01000072_00894580_01108625
CI01000072_01126495_01134364.mRNA mRNA upstream 383426 1126463 ~ 1134364 (-) True CI01000072_01126495_01134364
TU322054 other downstream 458453 283623 ~ 283764 (-) True G284127
TU323625 other upstream 592470 1335507 ~ 1354932 (-) True G285534
TU323812 other upstream 851074 1602289 ~ 1602443 (-) True G285697
TU323815 other upstream 851074 1594111 ~ 1627895 (-) True CI01000072_01596829_01610605
TU323892 other upstream 1262514 2005551 ~ 2008309 (-) True G285766
TU323875 other upstream 1425011 2168048 ~ 2170658 (-) True G285752

Expression Profile