RNA id: TU324481


Basic Information

Item Value
RNA id TU324481
length 444
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G286289
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3390707 ~ 3391150 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAGTTTAATCTGGATCAGAATGATCTGGATTTGGAAATCCCATGTTTTGCTATCCAGGATCAGGTAATCCATCTTTTTTTTTTGTGCTGGTTTTTCAAAGTAAAATTGGATTGGATCACCCTGATCCAGATACACACTTTTTCAGATGACCAAATCTGGATTACTAGTGCTCTACAGAGCCCCTAAAGGGACATGGTGATAGAAGGAATATGGGTAAAAAAAAACATTTCAATGCTTTTGTGTTCTCTCAGAAAAGTCCCGCATAGTGTTCACCCCAGAAACTTTGTGTTCGCTCGCAAAGAACTTTTGACTGGTTCATCTCTTATGATTGTGCCAATATAGTTTACAAACAGTGATTTAAAAAAAAACAAAAAAACAAAAACAAAAAAACACTTTAAATTAAATATAGTCTTTTTGTTTGGTATTTACAGTACATTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324477 lncRNA downstream 6672 3383823 ~ 3384035 (-) True G286285
TU324476 lncRNA downstream 21499 3368368 ~ 3369208 (-) True G286284
TU324473 lncRNA downstream 32921 3357489 ~ 3357786 (-) True G286281
TU324472 lncRNA downstream 33263 3356427 ~ 3357444 (-) True G286280
TU324470 lncRNA downstream 35125 3355358 ~ 3355582 (-) True G286278
TU324482 lncRNA upstream 13 3391163 ~ 3391378 (-) True G286290
TU324438 lncRNA upstream 2613 3393763 ~ 3473051 (-) True G286249
TU324406 lncRNA upstream 19512 3410662 ~ 3436199 (-) True G286219
TU324425 lncRNA upstream 109951 3501101 ~ 3502215 (-) True G286236
TU324445 lncRNA upstream 450520 3841670 ~ 3842062 (-) True G286256
CI01000072_03379532_03381460.mRNA mRNA downstream 8165 3379323 ~ 3382542 (-) True CI01000072_03379532_03381460
CI01000072_03330998_03335358.mRNA mRNA downstream 55349 3330817 ~ 3335358 (-) True CI01000072_03330998_03335358
CI01000072_03270542_03289988.mRNA mRNA downstream 100517 3270479 ~ 3290190 (-) True CI01000072_03270542_03289988
CI01000072_03210624_03244667.mRNA mRNA downstream 146040 3210219 ~ 3244667 (-) True CI01000072_03210624_03244667
CI01000072_03189624_03195527.mRNA mRNA downstream 195180 3189551 ~ 3195527 (-) True CI01000072_03189624_03195527
CI01000072_03396929_03398233.mRNA mRNA upstream 5497 3396647 ~ 3399019 (-) True CI01000072_03396929_03398233
CI01000072_03455112_03462887.mRNA mRNA upstream 63521 3454671 ~ 3462887 (-) True CI01000072_03455112_03462887
CI01000072_03497623_03625293.mRNA mRNA upstream 106473 3497623 ~ 3625293 (-) True CI01000072_03497623_03625293
CI01000072_03788767_03792874.mRNA mRNA upstream 397020 3788170 ~ 3793728 (-) True CI01000072_03788767_03792874
CI01000072_03844170_03870555.mRNA mRNA upstream 452342 3843492 ~ 3870555 (-) True CI01000072_03844170_03870555
TU324139 other downstream 391212 2993769 ~ 2999495 (-) True G286005
TU323875 other downstream 1220049 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 1382398 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 1762812 1602289 ~ 1602443 (-) True G285697
TU324361 other upstream 579120 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 579120 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 579120 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 579120 3970270 ~ 3976002 (-) False G286205
TU325381 other upstream 994995 4386145 ~ 4394223 (-) True G287021

Expression Profile