RNA id: TU324438


Basic Information

Item Value
RNA id TU324438
length 658
lncRNA type read_through
GC content 0.34
exon number 2
gene id G286249
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 3393763 ~ 3473051 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACAGCTTGGATGACATGGGGGTGAGTAAATTGTCAGGAAATTTTTATTTGAAAGTGGACTAATCCTTAAGCAGCACAACGGTTATTAATAAGAAATGTTTCTTGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGGATCTTGTGACACTGAAGACTGGAGGAATGATGCTGAAAATTCAGCTTTGCCATCACAGTAATAAGTTGATTTTTAAAATATATATTCAAGTAGAAAAGTTAATTTATAATATTATAATAATATTTCACTCAAATAAATATTCTGCTTCATTTGACTAGCTTCTACCAAGTGAAAAGTAACTTAACATGAATAAATTAGATGAGGATCTGTTTCTTGTACCTTTTTTAGCCTATTTATTTTGCTATCTCAGCTATACATGATTATATGGTTAGTTGATTTTATTTGCATTGCTGATATTATTTGCATTTTCAGAACAGACCACTCACCAGAGGACAACTTCTCTAGAATCACCTCAGATGACACAATGGATTAGAATAGATATCGTCAGATCACTGAACAAAATTTGTTTGTGGGAGTGCGTCTGTTCCATGTTCGTGTATTTTATTTGAAGGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324482 lncRNA downstream 2385 3391163 ~ 3391378 (-) True G286290
TU324481 lncRNA downstream 2613 3390707 ~ 3391150 (-) True G286289
TU324477 lncRNA downstream 9728 3383823 ~ 3384035 (-) True G286285
TU324476 lncRNA downstream 24555 3368368 ~ 3369208 (-) True G286284
TU324473 lncRNA downstream 35977 3357489 ~ 3357786 (-) True G286281
TU324425 lncRNA upstream 28050 3501101 ~ 3502215 (-) True G286236
TU324445 lncRNA upstream 368619 3841670 ~ 3842062 (-) True G286256
TU324371 lncRNA upstream 497077 3970128 ~ 3976002 (-) True G286205
TU324370 lncRNA upstream 497219 3970270 ~ 3976002 (-) True G286205
TU325197 lncRNA upstream 580000 4053051 ~ 4065995 (-) False G286867
CI01000072_03379532_03381460.mRNA mRNA downstream 11221 3379323 ~ 3382542 (-) True CI01000072_03379532_03381460
CI01000072_03330998_03335358.mRNA mRNA downstream 58405 3330817 ~ 3335358 (-) True CI01000072_03330998_03335358
CI01000072_03270542_03289988.mRNA mRNA downstream 103573 3270479 ~ 3290190 (-) True CI01000072_03270542_03289988
CI01000072_03210624_03244667.mRNA mRNA downstream 149096 3210219 ~ 3244667 (-) True CI01000072_03210624_03244667
CI01000072_03189624_03195527.mRNA mRNA downstream 198236 3189551 ~ 3195527 (-) True CI01000072_03189624_03195527
CI01000072_03497623_03625293.mRNA mRNA upstream 24572 3497623 ~ 3625293 (-) True CI01000072_03497623_03625293
CI01000072_03788767_03792874.mRNA mRNA upstream 315119 3788170 ~ 3793728 (-) True CI01000072_03788767_03792874
CI01000072_03844170_03870555.mRNA mRNA upstream 370441 3843492 ~ 3870555 (-) True CI01000072_03844170_03870555
CI01000072_03898250_03900844.mRNA mRNA upstream 425114 3898165 ~ 3900844 (-) True CI01000072_03898250_03900844
CI01000072_03908090_03922942.mRNA mRNA upstream 434336 3907387 ~ 3922942 (-) True CI01000072_03908090_03922942
TU324139 other downstream 394268 2993769 ~ 2999495 (-) True G286005
TU323875 other downstream 1223105 2168048 ~ 2170658 (-) True G285752
TU323892 other downstream 1385454 2005551 ~ 2008309 (-) True G285766
TU323812 other downstream 1765868 1602289 ~ 1602443 (-) True G285697
TU324361 other upstream 497219 3970270 ~ 3976002 (-) False G286205
TU324366 other upstream 497219 3970270 ~ 3976067 (-) False G286205
TU324367 other upstream 497219 3970270 ~ 3976002 (-) False G286205
TU324368 other upstream 497219 3970270 ~ 3976002 (-) False G286205
TU325381 other upstream 913094 4386145 ~ 4394223 (-) True G287021

Expression Profile