RNA id: CI01000078_00078859_00090123.mRNA


Basic Information

Item Value
RNA id CI01000078_00078859_00090123.mRNA
length 1792
RNA type mRNA
GC content 0.55
exon number 10
gene id CI01000078_00078859_00090123
representative True

Chromosome Information

Item Value
chromosome id CI01000078
NCBI id null
chromosome length 140406
location 78731 ~ 90123 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGTGTTCACAGCGAGTTCATCGATCCGCCTCCATCCGCGGCCCTGCGCTCGTTCTCGGACACGCAGACCAGGCTGCCCTGTCGGTATGTGGTGGAGGGCGAGGAGAAGGTGGTGCAGGTGACCTGGTCCAGACAGAAACCAGGAGGGGAAAAAGAGCAGATCATTATAGGACACTTTACTGAAGGACCTAAAGCGTCTCCGGATTTCCTGAAGCGTGTTCAGTTCGAGAGCTCTGAGCCGACGGTCGACTCGACGCTGTTGATTCTGAACACCAAGAAGGCCGATCAGGCCACATACACCTGCCACATCTCCACCTTTCCCTCCGGAAACTTCGAGAGACAAATCAGCCTGACCGTCTGGAGTCTGCCGATCTCCTCGCTGGATCCTGTGATCCTGCAGGAAGGGCAGTCGTTCTGTGTGGCTGCCTCCTGTCGTTCGGTCGGACACCCTCCGCCACGCCTGTCCTGGGACACGGAAATTCCCGGGCAGTCGCAGAACCGGAGCGGAGAGGATGGGGTCGTGACCTCGCAGTTTTACCTGCACCCTCTGCGCAGCATGAACGGCCGTCGGCTGGACTGTCTGGTGTGGCATCCGGCTCTGGACGGCCCGCGCAGAATCAGCAACCAGCTCATCGTGCACTTTCCTCCAGATGCAGAGATTGTTAGTTCTGGCTCCTGGAGGATCGGCCACACCGGATCAGAGCTCAGATGTGCAGTGAAAGGAAACCCGCTGCCGCAGAACGTCACGTGGAGCAGGAAAGACGGGCATCTGCCGGAGGGTGTGTTGGTTCAGAGGGACAGACTGCTGTTCGTTCGGCCGCTGAATGTATCAGACGAGGGTCTGTACGTCTGCCAGACAGGAAACAGTGTGGGAACCGCTAAAGCCCAGTTTAAACTGGAGATCGGAAAAGATGCTAATGATGTTGCACAAGCGATCAAGAACCCATCAGAGACTCTCCTCATCATCATCGGGGTGTCTGTCGCCGGGGCTTTGGTGGTCGTCATGGTGATCACCATCATTATCGTCAACTGTCACCTCAGACGCAAGAACAGGAAGCTGAAAAGGGCGCTCAGTGCGAGAACGGAGGAGATGATCAGCCTGTCGCGGCAGGTGTCCATGAGGAGACTCAACTCCATCAACTCTGATCCCAGGACAGCGGCAGAAGAGGGTTCACTGATGCGGATGGACAGTGTGATGAAGAACAGTGTTTTATCCGTGGAGGATCACTCCACGCTGAGAGACGGAGAGTACGACAGTCTCGGACGTCCTGCCATCTACCCGTCGTACCGACCGGACCGAGGCATTAAGAAGCTGAGAGACATCGAGGAGGACGAGAGAAGCGAGCGCAGACGAAGAGTCGAGTCCTACGTCAAATCCAGCAATATGTCTCTGGATTCAGGGCTTCACAGGGACCAGAGTTCTCCTCCTCGCTCCGTGAGCTCCGGTCCGACTGAAGCATGGAAACGCGGCTCTCGCAGAGAGATTCACCGAGACGAACATGATGCATACGTGCAGCAAGAGCGAATTCCAGAAGGAGAAGAAGGAAACAACTATCATTTGTCCGAGGCGGTTTCCAACTACTTCCAGTGCAGCAACGGAGGACTGACACCAAAGGAAAACCCCAACGCCATCATCATCCACTCGCGCAGACAGATCATCTGATGAAGGACTGTTACACACTCAGAAAGGGCATCATGTTGTTCTCAAACCTGCATGACTTTTGCAAAATGTTCATACTCCACAAAGTCATGCATATCACGATATATTATGATATGATAGACGAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328820 lncRNA downstream 36133 39522 ~ 42598 (-) True G289895
TU328817 lncRNA upstream 8986 99109 ~ 102760 (-) False G289892
TU328816 lncRNA upstream 10551 100674 ~ 102760 (-) True G289892
TU328845 lncRNA upstream 25758 115881 ~ 116270 (-) True G289920
TU328846 lncRNA upstream 36249 126372 ~ 126781 (-) True G289921
CI01000078_00064946_00068618.mRNA mRNA downstream 9702 64753 ~ 69029 (-) True CI01000078_00064946_00068618
CI01000078_00109982_00113960.mRNA mRNA upstream 19226 109349 ~ 113960 (-) True CI01000078_00109982_00113960
CI01000078_00128174_00129631.mRNA mRNA upstream 37658 127781 ~ 129993 (-) True CI01000078_00128174_00129631
CI01000078_00134116_00134872.mRNA mRNA upstream 43652 133775 ~ 134872 (-) True CI01000078_00134116_00134872

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00033173 True 2134 mRNA 0.53 11 NC_007113.7 58026496 ~ 58075414 (-)