RNA id: TCONS_00033173


Basic Information

Item Value
RNA id TCONS_00033173
length 2134
RNA type mRNA
GC content 0.53
exon number 11
gene id XLOC_016995
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58026496 ~ 58075414 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGAGTTGagtttttaagaaatgtttaaaagTCTGCACAGAGACCTGTGATCTAATGAGGAAAAATCTGAGTTTATAAAGGCTTCAGTGCACAAATCAAAGGTCAGAGTTGGAGTTTGTGTTGCGCATGCGCATGCGTGTGTGAGTGGGGTGGGCGGGACCTCGCGAGCACAGGTGTGTGAATGCTCACCTGAAAGCGTTATCATTTCACTTCAAACAGAGTTTTAatctagagttcatcaagatcgaCATCTTCCTAAAGACTTTCGGCTAATGTTGCGTGAGTAAACCGCAGCTTTCTGTACGTTTAATGTTTACCTTTTGACGCACGCTGGAGAAAACCTGAACGTGGATTAAAACATGAGAAGTGTTGAGGAGTAACAGCGAGAAAAGTTGATCAACGTGTGAATTAAGCAGCAACATGTCTAAACTACTGAACATCGGCGCATTCCTCCTCACATTCATCGtatGTGTTTGCAGTGAGTTCATGGATTCGCCGATGTCCTTGCGCTCGTTCAGCGGCTCCGAGGCGAggctgaagtgtgtgtttgtggcgCCCAGAGATGTGACTGTGGTACAGGTGACCTGGAGCAGACACACACCTGCCGGAAAAACACAGCAGATCATCACCGGACACTACACTGAGGgacccaaagTGTCTCCTGAGTTTGCGGATGGTTTTCGGTTTGAGAGTCCAGATCCGTTGACTGACTCTACTCTACTGATCGAGAACACTGTACGGGCGGATGAAGGTGTTTATACCTGCAGCATCGCCACCTTCCCATCCGGAAACTTCCAGAGGAGGATCAGCCTGAGCGTCTGGATGTACCCGATCTCCTCTGTGGAGCATGTGGTCCTCAAGGAGGGTCAGTCCTATGGTATTGCTGCATCTTGTCGTGCGGTCGCTCACCCTCCGGCACGTCTGTCCTGGGACACTGATGTTTCTGGCCAATCGCAGAACCGCAGCGGAGACGGAGGAGTCGTGACCACTCAGTTTTCTCTCTATCCTTCACGCAGCATGAACGGACAGAAGCTGGACTGTCTGGTCTGGCATCCTGTTTATGAGGAACCGCACAGACTCGCCAACAAACTCGTCGTACAATTTCCTCCAGATGCTGAGGCTGTGGGCTCTGGATCATGGCAGATCGGAAGCTCTGGATCAGAGATCAGATGTTTGGTTAAAGGAAACCCGCTGCCGCAGAACGTCTCCTGGAGCAGgagtgACGGTGTGTTGCCGTCAGGAGTGTTGGTCCAGAAGGACAGGCTGGTGTTTTCCCGTCCGCTGCAGCAGACCGATGAGGGTGTTTACGTCTGCAGGACACACAACACCCTGGGAGTCGCCAAAGCTGAGTTTACACTGCAGATTGACGctgttCGCAGTGAGTTCTCCATCAGTTCGTCACACACTCTCCTCATCGTGATCGGAGCGGCGTCTGCAGGTGTTTTAGTGTTATTCGTGGTCTTCGCCATCATCTACATCAACTGCAACCTGAGCCGCAAGAACCGCAAGCTGAAGAGAGCTCTGAGCGCCAGAACggagGAGATGATCAGTCTGTCGCGGCAGGTGTCCATGAGGAGACTGGACTCCATCAACTGTGACCCCAGAGCGCAGGCGGAGGACAGTTCACTGAGTCGCATGGATAGCGGCATGAAGAACAGCGTTTTATcagtggagGATCGCTCTCTGCTCAGTGATGTGAGATGCCGACAGGGAGATGGAGAGTTCGACAGTCTCGGCCGGCCAGCGATCTACACCTCATACCGACCCGAACGCCAAAGTAAAAAACTGCGAGAAATCGAGGAGGAGAAAAACGAGCGCAGACGCAGAGTCGAGTCCTTCGTGCGCTCCAGCAACATGTCCCTGGACTCGGGTCTGCGGGATCAGTGTTCTCCTCCTGCGTCTGTGAGCTCGGGTCCGACTGCTGAAGCCAACGGTGACGGCTGGAAACGAGGATCTCGCAGGGAGATTCACCGAGTGGAGCGAGAGAGAGACAGACTCCCGGAAGGAGAAGAGGAAAACTCTGCGCTCTTGTCTGAAACCGCCTCCAACTACTTCCAGTGCAGTAACAGCGGACTGGTGCCTAAAACCTCCATCAATGGTGGTGGGACACACCTGCGCGGACAGGTCATCTGA

Function

GO:

id name namespace
GO:0046718 viral entry into host cell biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005912 adherens junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-114 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion and viral entry into host cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction. Orthologous to human NECTIN4 (nectin cell adhesion molecule 4).

Ensembl:

ensembl_id ENSDART00000161920

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033163 lncRNA downstream 188678 57830325 ~ 57837818 (-) True XLOC_016990
TCONS_00033162 lncRNA downstream 195355 57828710 ~ 57831141 (-) False XLOC_016990
TCONS_00034010 lncRNA downstream 214682 57801654 ~ 57811814 (-) True XLOC_016989
TCONS_00033430 lncRNA downstream 273592 57730336 ~ 57752904 (-) True XLOC_016988
TCONS_00034009 lncRNA downstream 440299 57581671 ~ 57586197 (-) True XLOC_016986
TCONS_00034011 lncRNA upstream 14907 58090321 ~ 58109158 (-) False XLOC_016997
TCONS_00033431 lncRNA upstream 15805 58091219 ~ 58109574 (-) False XLOC_016997
TCONS_00033432 lncRNA upstream 31760 58107174 ~ 58109574 (-) True XLOC_016997
TCONS_00033433 lncRNA upstream 111480 58186894 ~ 58201176 (-) False XLOC_017000
TCONS_00033434 lncRNA upstream 137135 58212549 ~ 58213192 (-) True XLOC_017001
TCONS_00033172 mRNA downstream 34858 57989402 ~ 57991638 (-) True XLOC_016994
TCONS_00033171 mRNA downstream 35455 57953239 ~ 57991041 (-) False XLOC_016994
TCONS_00033169 mRNA downstream 85459 57925518 ~ 57941037 (-) False XLOC_016993
TCONS_00033168 mRNA downstream 108182 57913490 ~ 57918314 (-) True XLOC_016992
TCONS_00033166 mRNA downstream 110179 57892667 ~ 57916317 (-) False XLOC_016992
TCONS_00033174 mRNA upstream 2248 58077662 ~ 58085444 (-) True XLOC_016996
TCONS_00033175 mRNA upstream 39709 58115123 ~ 58142854 (-) True XLOC_016998
TCONS_00033176 mRNA upstream 97633 58173047 ~ 58183499 (-) False XLOC_016999
TCONS_00033177 mRNA upstream 103531 58178945 ~ 58183499 (-) True XLOC_016999
TCONS_00033178 mRNA upstream 111432 58186846 ~ 58201173 (-) False XLOC_017000
TCONS_00033170 other downstream 84633 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033146 other downstream 739238 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 757338 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033137 other downstream 923011 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 964703 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033188 other upstream 561262 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 792695 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 962781 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 1026755 59102169 ~ 59102252 (-) True XLOC_017022
TCONS_00033216 other upstream 1260367 59335781 ~ 59336963 (-) True XLOC_017033

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000078_00078859_00090123.mRNA True 1792 mRNA 0.55 10 CI01000078 78731 ~ 90123 (-)