RNA id: TCONS_00033430


Basic Information

Item Value
RNA id TCONS_00033430
length 618
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_016988
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57730336 ~ 57752904 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACCATCTGTCACGTCCAATCAGCAGCAGCGATTTGCACAAACACGAAAGACGAGGCGTGACCTTTGAGTGCAGCGTGTGACCTTTGAAAAAAGGGAGATCGTCCTCTGCATCTTACTGTATTATGATGATAAACGGCGTTCATTAACCTGCTGCGGACAATAATTAGCTGTAAACACCCTAATTTTACTCATTCTGTCACACCGAGCCACTGTAGTTCCTTCATTATATCATAATGCATTAGTTTTGGGTGTTCTGCTGTATATATTCACTCCACTGAAACTCTGGGCTCTTCTATtgatccctctctctctctctctctctctctctctctctctctctttgcagTTTTATTATTAATGGCTGGAAGTTGGTGCTCATCTGTCTCCATGGACGCAGTTTCCCATAATGCATCTATCCCTGAGAGCAGACGGAGATGGAGAGCGGTCATTTCGCAGACGTTTGTCCCTCTCCAGTTCTAGAAAATGTCATCATCATCAGTCCATCAAAGCCTGTCGCTGGAGAATGACGGACAGCTCTCAGCCACCAATGGGAGAAGAGTCAGCTTTTAGTTTCTTCAGAGTGTGTGAGGTTTCCACATCAGCAACTAGATGCAAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034009 lncRNA downstream 144139 57581671 ~ 57586197 (-) True XLOC_016986
TCONS_00034008 lncRNA downstream 144968 57581671 ~ 57585368 (-) False XLOC_016986
TCONS_00034007 lncRNA downstream 150046 57573353 ~ 57580290 (-) True XLOC_016985
TCONS_00034006 lncRNA downstream 150062 57573353 ~ 57580274 (-) False XLOC_016985
TCONS_00034005 lncRNA downstream 150062 57573353 ~ 57580274 (-) False XLOC_016985
TCONS_00034010 lncRNA upstream 48750 57801654 ~ 57811814 (-) True XLOC_016989
TCONS_00033162 lncRNA upstream 75806 57828710 ~ 57831141 (-) False XLOC_016990
TCONS_00033163 lncRNA upstream 77421 57830325 ~ 57837818 (-) True XLOC_016990
TCONS_00034011 lncRNA upstream 337417 58090321 ~ 58109158 (-) False XLOC_016997
TCONS_00033431 lncRNA upstream 338315 58091219 ~ 58109574 (-) False XLOC_016997
TCONS_00033159 mRNA downstream 23297 57609291 ~ 57707039 (-) True XLOC_016987
TCONS_00033156 mRNA downstream 256345 57447105 ~ 57473991 (-) False XLOC_016984
TCONS_00033157 mRNA downstream 256356 57448301 ~ 57473980 (-) False XLOC_016984
TCONS_00033155 mRNA downstream 261221 57447105 ~ 57469115 (-) False XLOC_016984
TCONS_00033152 mRNA downstream 287126 57416844 ~ 57443210 (-) False XLOC_016982
TCONS_00033160 mRNA upstream 72528 57825432 ~ 57837838 (-) False XLOC_016990
TCONS_00033161 mRNA upstream 72657 57825561 ~ 57834983 (-) False XLOC_016990
TCONS_00033164 mRNA upstream 126443 57879347 ~ 57891504 (-) True XLOC_016991
TCONS_00033165 mRNA upstream 139762 57892666 ~ 57900437 (-) False XLOC_016992
TCONS_00033166 mRNA upstream 139763 57892667 ~ 57916317 (-) False XLOC_016992
TCONS_00033146 other downstream 443078 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 461178 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033137 other downstream 626851 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 668543 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033120 other downstream 1687706 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033170 other upstream 187776 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033188 other upstream 883772 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 1115205 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 1285291 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 1349265 59102169 ~ 59102252 (-) True XLOC_017022

Expression Profile

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