RNA id: TCONS_00034008


Basic Information

Item Value
RNA id TCONS_00034008
length 3698
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id XLOC_016986
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57581671 ~ 57586197 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatatatatatatatataaatatatatatatattaccacaACAAATAAATTCcgatagttgttgtgttgccatagcaactatgcaattgccacaacagatcaattacaaaaactgttgtaaccatagcaactatgGAATTACCACAACATATTATTATAGTTCTTATgatactatagcaactatagaataacaACAGACTAATTACgatagttgttgtattaccaaAGCTACTACaggatcaccacaacagatctattaccatagttgttgtgttaccgtagcaactacagaattaccacaacagatcaattactataactgttgtaaccatagcaactatagatttACCACAACATATGGATTATTACAGTTGTtatgttactatagcaactagaGAATCACAACAGATCACTTTCGAAAGTTGTGTGACCAGAGCAACTCTAGAtataccacaacagatcaattactataactGTTGTAACCATAGCaattatagaattaccacaacatatCCATTGTTATGGTTCTTGCGTTACTATAGCGACTATaaaatcacaacagatcaattacgataggtgttgtgttaccatagcaacaataaaattaccacaacagatcaattaagaTAGTTgctctgttaccatagcaactgtagaatcaccacaacagatcaattacgatagttgttgtgttaccataccAACTATAAAATTAACACaaaagatcaattactatagtttttgtgttaccatagcaactataggatcaccacaacagatcaattacgatagttgttgtattaccatagcaactattgaaTCACTACAAAAGGTCAATtacaatagttgttgtgttaccatagcaactgtagaatcaccacaacagattaaatacaaTTACTTTACTATACTATGGTTCAAAAGACattataaattactgtaaaataatagtcAAATTACTATTAAATGCTATAGTATGTTTTTTCATGTGCGCTTTTTAGTGATTCTTTGCATAATAAAACAGTGTACATGTTATATGCTGGAGGGAACAGTATGAGTAGTGTCATTCTGAACACAGCCACACTTCAATCCATCCTTCTTATGAAAGATAGCATGTccaataaaagctctgctgtctCACCAGCTCTCCAGCAGGATCTGCTTTGTGACTTCCTACATGTTGTGGTGTTGAAGCCGAGAGTGTGTTCTCTCATTAGCCCCGGCGGTGGAGCAGATGCCCTTTCTCATCTCCAGAAACTAGGTCTTTCGGTCCCCGGGCCCCTCGTCAGTCTGGTCTCCTCCACCGTCTCCTATTGATTCACACAAACGCTCGTCGCCTGTGCTTGATGATGCACAACGAACAGGCCACATTTCACTCCAATTTAGAGCAACTAAAAAATCTGAAGTTCACTAATAGATCTCGTtatatgtttttgaaccacatttTGATTTCAATGCCTGAATAGAGTATTTATTACATGACAACATTTCTCAACTTGTTGTGAGTATCCCTGCTGaaaacccagcttaaaccagcctaagctagttggctggttttagctgatcgaccagcctggttttaaaggggtttaggtcatttccagcctgttcttagctggtcaggcagggAGATGatcagctaaaatcagcttgaacagcctaggagtccagccaaaactGTCCAGCTTTAACCAGGCTATTCaaattggttttagctggttattttAAAGCCTGACAAGCTAAGACtttgctggaaaccagcctggaaatgacaaAAACCCCTctattttttcagcagggacgtcatttatagtaaatactagtgttttgaaCAACACTATAGTGTATTATACCATATACAACACTTTATGAATGCTAATGAAGTGATCAATTGCAATAAAAAGCATACACTtctagtttttactacagtaaactgtggtgtatttaaataatagttaTGAAAAATGCAAGAAtttccacaacagattaattcaagtatttTACTATAGCATTGTTCAAAGACACTATACTACTTGCTATAAATCACTAAAGTAGTTCACGCGGGAAGTCAACTTAAAAGTAAACAATTAGCATGGGATACCGGAAACTAGCAACGTCAATCGCGCAGCTGGTTATTGTTAAATCTGATTATACTaacattaatttaatcattttttttacctGAAAGCATCTCTaacttcttgttttgttttgctgatcTGTATTATTAGCCTAAACTGGAGAAATTTCGCCTGTAATGGAGGTCTAGCATTCATTTATTTCGACGTGTGAAATGAAAACTCCCATAAATGTGCTTGAGGGAACTGCACTGTATTATTAGATTATCCAAATGCGTGTTTTATTTGCTCTAAACAAGATTTTGGAGAACGGGAACGTTGTTTTTAttactctgaggtgattttgtcATGTAACTGTACTGCCATCTAGCGGAAAACAGCCAAAACATTGAGAATCTCCATTCATGATTCTCAGGTTCTCCGTTCTGCCATAAATGCTCGAGAATAgttttatgcatatatatatatatatatatataaaacaatgacTGTTAGTCCATAATATACATGACAGAAAGTGTCAATATTATCTTACTTGGTCATGAAACACTCCTTTGCCCTCAGTCTGTGACTCTGATCTCAGTCAcggataataaatatatttgatgaCACAATAACAAAATTAGACGTAGTGCTGTAAAATCTGCCTTTTTTTGAAGTGTTCAGATTTGACTGTGGTGTGAAAAGAAACTCAACAACTGTTGATATTTCTACTTGTAATAATTTAGATTCAGGAATGCTATTCTTCAGACAGTCTCCATTTGAGATCTCTGCATGCATTTCTTTACATTCAATGACATTTAAATCCCTAAACCTGCCAAACACTCCCTTTGtacttgtgtaaaaaaaaaatcatgtgatgTCTTTATGTTCACTGTGAGATTGGATGAAAACACTGTTTGACTCATGTTAAATGAGTATGAGCCATAATCTTGTGAGATTTTTCACAGCGTTCAGAGTTTGTGAATATTTCAGGTATATGGGAATATATATGCCTGACGTTCTTACTATAAAGCAATATATTCTTgtcttttgcttgcttttgcaatGAGACATGATTTCTGTTCCTATTTGTGGGCATTCAGTGGCACTGATAAAGAGTTATCGAGCTCTATCCCAGATATTTCAGGTGAAATGTGACTTCTGATGTGCCATTTTCATGCACGCCGCTTTTATTTGCTCATCGTGTGTGTTTTGGACCTTTACAGCACATGATGAACGAGAGTCAGTCTGGAAATGCAGTCTtcaacttgatttattttttccatcCAATCTCGCAGTCGTGTCCATTATAATGTGTATGAATGTTGTTTATCTGTTATTTTCTATGCATATGTTTGTTTTATACTGTTTGTCTTGTAAAACGAGAAAGGTCTTTTATTCATAAAAGCATGTTGTACCCTTTTCACTGTCTTGGCTGTTTCTTGTCTGttcttgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgatcaTGTATTTGTTCAACAGCACTAAAATGGTCATGATTTATAGATGGAAGATGTTCATTTTAAACCATTTCTAGAAAAAAGAATGACTTATAtgcaatcaccgg

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0042551 neuron maturation biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0051648 vesicle localization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034007 lncRNA downstream 1381 57573353 ~ 57580290 (-) True XLOC_016985
TCONS_00034006 lncRNA downstream 1397 57573353 ~ 57580274 (-) False XLOC_016985
TCONS_00034005 lncRNA downstream 1397 57573353 ~ 57580274 (-) False XLOC_016985
TCONS_00034004 lncRNA downstream 2124 57490867 ~ 57579547 (-) False XLOC_016985
TCONS_00033158 lncRNA downstream 107752 57459138 ~ 57473919 (-) True XLOC_016984
TCONS_00033430 lncRNA upstream 144968 57730336 ~ 57752904 (-) True XLOC_016988
TCONS_00034010 lncRNA upstream 216286 57801654 ~ 57811814 (-) True XLOC_016989
TCONS_00033162 lncRNA upstream 243342 57828710 ~ 57831141 (-) False XLOC_016990
TCONS_00033163 lncRNA upstream 244957 57830325 ~ 57837818 (-) True XLOC_016990
TCONS_00034011 lncRNA upstream 504953 58090321 ~ 58109158 (-) False XLOC_016997
TCONS_00033156 mRNA downstream 107680 57447105 ~ 57473991 (-) False XLOC_016984
TCONS_00033157 mRNA downstream 107691 57448301 ~ 57473980 (-) False XLOC_016984
TCONS_00033155 mRNA downstream 112556 57447105 ~ 57469115 (-) False XLOC_016984
TCONS_00033152 mRNA downstream 138461 57416844 ~ 57443210 (-) False XLOC_016982
TCONS_00033153 mRNA downstream 138461 57416851 ~ 57443210 (-) False XLOC_016982
TCONS_00033159 mRNA upstream 23923 57609291 ~ 57707039 (-) True XLOC_016987
TCONS_00033160 mRNA upstream 240064 57825432 ~ 57837838 (-) False XLOC_016990
TCONS_00033161 mRNA upstream 240193 57825561 ~ 57834983 (-) False XLOC_016990
TCONS_00033164 mRNA upstream 293979 57879347 ~ 57891504 (-) True XLOC_016991
TCONS_00033165 mRNA upstream 307298 57892666 ~ 57900437 (-) False XLOC_016992
TCONS_00033146 other downstream 294413 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 312513 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033137 other downstream 478186 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 519878 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033120 other downstream 1539041 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033170 other upstream 355312 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033188 other upstream 1051308 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 1282741 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 1452827 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 1516801 59102169 ~ 59102252 (-) True XLOC_017022

Expression Profile

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