RNA id: TCONS_00033153


Basic Information

Item Value
RNA id TCONS_00033153
length 2429
RNA type mRNA
GC content 0.42
exon number 12
gene id XLOC_016982
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57416844 ~ 57443210 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAAAGTCATTATCAGAGGGAATAATGTTAATATAAAGTATCTGGCTCCATCAGAATAGACATTTCTGCTATTAACCTTTCAAATGTGATTATTATATCAATATAGTCACATAAAAGTCAATATAAAAgtgaattattttaatgtaaagtaTCTGGATTGTTCAGAATAGACATTTCTGCTATTAGTCTTTTACATGTCGTTGGTCCTAATAATGAGCAGATCTGGAAAGTGAATAGATTATGGAGTTTTGGACTTTTTCATGAATCAGACTGATCTAAACTCTCGATCAGCTCGATGACCGGCTGTAAACTAGAGTCTCTGTTGAGTACAGCTCAGTCTGAGCTTATCTGTTAAGATTAAAACATCAGCCATGGCTCCCAAAAAGAGGCCAGATCCTATAGTTATAACTGGAAGCGGAGAAGCACAGACGACCTCCACGCCCATAGATGCTGCATCAGAAGCGAATCTTGAAGCCCTGCAGAAGAAGCTGGATGAGCTGGATTTGGACGAGCAGCAGAAGAAGCGTCTGGAAGCTTTCCTCACGCAGAAAGCCAATCTGGGAGAGCTGAAGGACGATGATTTCCAGCATATCTGTGAACTGGGAGCTGGAAACGGAGGAGTGGTGAATAAAGTGTGCCACAAACCTTCAGGTCTCGTCATGGCCCGGAAGTTAATTCACCTGGAGATCAAGCCGGCCATCAGGCATCAGATCATCAGAGAGCTGCAGGTCTTGCATGAGTGTAATTCACCATACATCGTGGGTTTTTACGGCGCATTTTACAGCGATGGCGAGATTAGTATCTGTATGGAGAACATGGACGGCGGATCGTTGGATCAGGTCCTGAAAGAGGCTCGCAGAATCCCAGAGGAGATTTTGGGAAAAGTCAGCATAGCTGTTTTAAGAGGTCTTGCTTACCTTCGAGAAAAGCACCAGATTATTCACAGagATGTGAAACCCTCAAATATTCTGGTAAACTGTCGCGGGGAGATCAAGCTGTGTGACTTCGGTGTGAGCGGGCAGCTGATCGACTCCATGGCCAACTCTTTTGTAGGAACACGCTCATACATGTCGcCGGAGCGGTTGCAGGGCACTCATTACTCGGTTCAGTCAGACGTGTGGAGTATGGGTCTCTCTCTGGTGGAGCTCGCCATCGGCCGATACCCTATTCCTCCACCTGACGCCAAGGAGCTGGAGGGCATCTTCGGCAGGGCACTGATGGATGTTGGAGATTCAGAAACACACAGCACGTCTCCTCGACCCAGACCACCTGGCAGACCCATCAGCGGTCATGGGCCGGTCATGGCTATATTTGAGCTGCTGGATTATATAGTCAATGAGCCTCCTCCTAAACTGCCTCACGGCGTCTTCACTCCTGATTTCCAGGACTTTGTGACCAACTGtctTATTAAAAACCCTGCAGACAGAGCGGACCTGAAGATGCTGATGAATCACACATTTATCAAACGCGCCGAAGTGGAGGAGATGGACTTTGCTGGATGGTTGTGTAAAACAATGGGTCTCAATCAGCCCAGCACACCCACACAAACAactgaatgacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatgaacatttGAATGACACATACATATGAACAgctgaatgacacacacacatacatatgaccAACTGAacgactaacacacacacacacacacacacacacacacctgagcgtCACGTTTCCCCTGCAGAACACAAATGTTTACAGCTGATCTGATGGAGCACATGCAGAGCTGCTTATTTTACACTTCTgccactccacacacacacacacacacatgggtgAATATCATGAAATGCACTCATATGTCATGAGTGTGTTTTCTATCATGATGCTTTAGGATATTTGTCTCATTGTAATGAGGAGAAACAATCAATTAGTCATTGTTGTACTGCTTTAAttaataattgtcatttttatagTCTTATTTTAGTACCACAATTACAGTAATATTTGTACTGTGATGCATAAAACTAGCGCTGCAAAAAATGTACCGAGACAAATGAATCAATAAAGTGTAAAAGAATTGGGCTCATCAAAGTGTAGTTATGCAAACACACCCTGCTCCTAAAATGGACTTGCTTTATGAAGCTAATTATCCTTCATTTTCTCTCATGAGCTTCAGTTATGCATTAATAACTGCAGAAATATATCAGATTCACCCATGTGCACATCCAGACACACTTCAGTTCTTCATTTGGAAATAAAAAGTGCATTTCTGACTCGGTGTTTCCAGTATAAACATCTAAACTTTATTAAGTCAACAAGCATTTATGTGAGAAGCAAAATGAGTGACGATGATTAAAAAAGAAGACAAATTAAGtgatttttatgctttaaatgagaaataaatcTGTCAGTGGTGTC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0000187 activation of MAPK activity biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004708 MAP kinase kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-34 Predicted to enable MAP kinase kinase activity. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in cardiofaciocutaneous syndrome 4 and small intestine adenocarcinoma. Orthologous to human MAP2K2 (mitogen-activated protein kinase kinase 2).

Ensembl:

ensembl_id ENSDART00000099839

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034003 lncRNA downstream 11123 57400996 ~ 57405728 (-) True XLOC_016981
TCONS_00034002 lncRNA downstream 11949 57400996 ~ 57404902 (-) False XLOC_016981
TCONS_00033151 lncRNA downstream 38022 57369009 ~ 57378829 (-) True XLOC_016980
TCONS_00033150 lncRNA downstream 84581 57329205 ~ 57332270 (-) False XLOC_016980
TCONS_00033428 lncRNA downstream 132139 57268785 ~ 57284712 (-) True XLOC_016979
TCONS_00033158 lncRNA upstream 15928 57459138 ~ 57473919 (-) True XLOC_016984
TCONS_00034004 lncRNA upstream 47657 57490867 ~ 57579547 (-) False XLOC_016985
TCONS_00034006 lncRNA upstream 130143 57573353 ~ 57580274 (-) False XLOC_016985
TCONS_00034005 lncRNA upstream 130143 57573353 ~ 57580274 (-) False XLOC_016985
TCONS_00034007 lncRNA upstream 130143 57573353 ~ 57580290 (-) True XLOC_016985
TCONS_00033147 mRNA downstream 37635 57310523 ~ 57379216 (-) False XLOC_016980
TCONS_00033149 mRNA downstream 38103 57317508 ~ 57378748 (-) False XLOC_016980
TCONS_00033148 mRNA downstream 72814 57317508 ~ 57344037 (-) False XLOC_016980
TCONS_00033144 mRNA downstream 152517 57247222 ~ 57264334 (-) True XLOC_016978
TCONS_00033142 mRNA downstream 152539 57239983 ~ 57264312 (-) False XLOC_016978
TCONS_00033155 mRNA upstream 3895 57447105 ~ 57469115 (-) False XLOC_016984
TCONS_00033156 mRNA upstream 3895 57447105 ~ 57473991 (-) False XLOC_016984
TCONS_00033157 mRNA upstream 5091 57448301 ~ 57473980 (-) False XLOC_016984
TCONS_00033159 mRNA upstream 166081 57609291 ~ 57707039 (-) True XLOC_016987
TCONS_00033160 mRNA upstream 382222 57825432 ~ 57837838 (-) False XLOC_016990
TCONS_00033146 other downstream 129593 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 147693 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033137 other downstream 313366 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 355058 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033120 other downstream 1374221 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033170 other upstream 497470 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033188 other upstream 1193466 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 1424899 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 1594985 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 1658959 59102169 ~ 59102252 (-) True XLOC_017022

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01094972_00001759_00004742.mRNA True 1338 mRNA 0.43 7 CI01094972 1084 ~ 4742 (-)
bowfin (Amia calva) AMCG00005814 True 1472 mRNA 0.59 13 CM030142.1 11082498 ~ 11093542 (-)