XLOC_016980 (tcf3a)


Basic Information

Item Value
gene id XLOC_016980
gene name tcf3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57310523 ~ 57379216 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033147
TGGCCACCGAATACGTCAATCAAACTTTCCCCGATCGCTATTGGTCCGCTCAGTGGGTCTATCGTGCCATCTCGCACTTTTTCTCAGTCCATCGCTCTTCAACAGTGCGTCGTGTCATTCCGCGCGCGAGTCTAGTACTGCGTGATTTAAAGCACAATCGGGAAATATCAGGATAAAGTTACATATACTGTCGTCGCTGATGTTTGGCGTTTTAATTGTGTTGGTTGTGGATTAAATATCAAAGTAAACGCGCGATTAACGCAGTACTAGTTTTCTGGGCGTTTGAAATCGGACACCGCTCTAACGTCTCCCCTCCGCGCGGAGGATTACACTGTTGGGGCTGACAATGTGGACGGTGCTAAAATGTCTCCTCTGAAGATGAGATGTTACATTTGTAGCGCCCAAAATAATTAGAATAGAACTTTAAGCAGAGTTACATTTGAGCACTATTACATCGTAACACTTGTCGACGCGGACTGTTCGCGTCTGCCGGGAAATAGGACGCATTTTGCACCGTGATTTAGCGGGACCTGAGACACGGAGGGGGGAAATTTTGTCCCCCAACTTTTCTGTTTTTCCTCTCAGGCTGAAGCGCGTTTCTCTCCCGCTGGATGCCGCGCGCGTGACGCGAGAAACAGATCGTAAAGCTGTTTGAGCTGAAAGAAAGACGTCTATCAAGAGAAGCAGATCAGGATGGCGACGGTGGGGACCGACATGGAGCTCAATGACCTGTTGGATTTCAGTATTATGTTCCCTCATCCAATGTCAAACGGGAAAAGCAGAGGCCCCAATATACCCAGCAGTCAGTTCGgTTTAGATGACAGAAATGGCTCCGGCTCCTGGGGTTCAGAAGCAAACAGTCCTTCATTCGGCGCACGGCTGTATGGAGACGGCCATCACTATCCTGAACATGACAACATGTACAACTTAGAGATTGACGGTAAATCAGAGCGAGGTTACCCTGTCACACAGCCGCAGCTCCTGCCGGGTGAGATCAACATCGCAGCTTCTGATGCTCTTTCTCCTCCTGGAATGAAAGGCTCTTCTCAGTTTTACAGTCCGCACCGCCGCAGGCCTGCAGAGTCCAGTATAGATCCACTGCCCAAAAAGAGGAAGGTTCCTCACGGCCTGCCGACGTCCATATCGGCGTATCCAGGCTCTACTGGTGACGATTATAACCAGGACAGCGCCGGATACCCCGGATCCAAACCTGGAAACCTTTATCCAGGCTTTTTTAATGTGCAAGAAGGACTTCCAGATCATTGGGGTCAGTCTGGATATCCTCCGGTCATGAGCAACTTCATAAACCCACAGAAGCGTCAGCCGCTGCCGGTGTCTCCGCAGAATTACCCTCTTCACGGCAGCGAGGTCAATTTACCCTCCAGCTTCCACTCGGTTCCTGCAGGTTACGGCGTTCCCAACCACACACCACCCATCAGCTCCAGCGAAGGCATCATGGGAAACAGAGGAGCAAACGCTGGCAGCTCCGGTGCAGAGATCGGGAAAGCTCTGGCTTCGATATATCCATCAGACAATAATGGCAGCAACTTCTCCTCGACGCCGTCCACTCCTGTGGGCTCTCCTTCTAATGTGGCCGcCTCTGCATCTCAGTGGCCCAAAGGCTCCTCTCAGCCTGCGCCATCGCCTGGTTTTGAAGCAGGATTGGcacagAGTAAGCTAGATGACCGTCTGGGTGAAGCACTGCATGTGTTGAGGAATCATGCGGTGGGCACAGATATGCAGAGTTTGCTGAGCGCTGCCATCTCTGGTCATTCGGCTGGTGCTGCGGCTCTGGGCTCCCTCAGTCAGGCCTTCGGTCTCGCCAACCGTCTGCCGGGCCTGATGTCAAATCACAGTGAAGACGCCGCAGGTTTACCGCAGTCCAGTGCTCTTCTGCAGGGACACCACACTTCCCATCAGCCTCCACCGTCCTCTCAGTCTGACACCTTCACCAGTCTCTCTTTGGCTCGCTCGTCTCACGCCTCCAGCTCAGATATAAAGAGAGAAGACAAAGACGACGATGAGAATCTGTCTATCGCAGATAAATCAGAGGATGAGAAGAAAGATGGAAAAAGCCGCACGAGAACGAGTCAAGACGAGGACGAAGACGAGGATGATGAGGATCTGCCGGTGGAGGTGAAGGCGGAGCGGGAGCGTGAGCGGCGAATGGCCAATAACGCCCGCGAGCGTCTGCGTGTGCGCGACATCAACGAGGCCTTCAAAGAGCTGGGCCGCATGTGCCAGCTGCACCTGAGCAATGAGAAACCGCAGACCAAACTGCTGATCCTGCACCAGGCCGTAAACGTTATTCTCAACCTGGAGCAGCAAGTGCGAGGTCAGTGTGTGCGGCTGACCTCAGATCAGTGTTTAGACTCGCGGAGATCCGTCTGTGGCCGCCACGCCTGA
>TCONS_00033148
ACATGACAACATGTACAACTTAGAGATTGACGGTAAATCAGAGCGAGGTTACCCTGTCACACAGCCGCAGCTCCTGCCGGGTGAGATCAACATCGCAGCTTCTGATGCTCTTTCTCCTCCTGGAATGAAAGGCTCTTCTCAGTTTTACAGTCCGCACCGCCGCAGGCCTGCAGAGTCCAGTATAGATCCACTGCCCAAAAAGAGGAAGGTTCCTCACGGCCTGCCGACGTCCATATCGGCGTATCCAGGCTCTACTGGTGACGATTATAACCAGGACAGCGCCGGATACCCCGGATCCAAACCTGGAAACCTTTATCCAGGCTTTTTTAATGTGCAAGAAGGACTTCCAGATCATTGGGGTCAGTCTGGATATCCTCCGGTCATGAGCAACTTCATAAACCCACAGAAGCGTCAGCCGCTGCCGGTGTCTCCGCAGAATTACCCTCTTCACGGCAGCGAGGTCAATTTACCCTCCAGCTTCCACTCGGTTCCTGCAGGTTACGGCGTTCCCAACCACACACCACCCATCAGCTCCAGCGAAGGCATCATGGGAAACAGAGGAGCAAACGCTGGCAGCTCCGGTGCAGAGATCGGGAAAGCTCTGGCTTCGATATATCCATCAGACAATAATGGCAGCAACTTCTCCTCGACGCCGTCCACTCCTGTGGGCTCTCCTTCTAATGTGGCCGcCTCTGCATCTCAGTGGCCCAAAGGCTCCTCTCAGCCTGCGCCATCGCCTGGTTTTGAAGCAGGATTGGcacag
>TCONS_00033149
GACGCGGACTGTTCGCGTCTGCCGGGAAATAGGACGCATTTTGCACCGTGATTTAGCGGGACCTGAGACACGGAGGGGGGAAATTTTGTCCCCCAACTTTTCTGTTTTTCCTCTCAGGCTGAAGCGCGTTTCTCTCCCGCTGGATGCCGCGCGCGTGACGCGAGAAACAGATCGTAAAGCTGTTTGAGCTGAAAGAAAGACGTCTATCAAGAGAAGCAGATCAGGATGGCGACGGTGGGGACCGACATGGAGCTCAATGACCTGTTGGATTTCAGTATTATGTTCCCTCATCCAATGTCAAACGGGAAAAGCAGAGGCCCCAATATACCCAGCAGTCAGTTCGgTTTAGATGACAGAAATGGCTCCGGCTCCTGGGGTTCAGAAGCAAACAGTCCTTCATTCGGCGCACGGCTGTATGGAGACGGCCATCACTATCCTGAACATGACAACATGTACAACTTAGAGATTGACGGTAAATCAGAGCGAGGTTACCCTGTCACACAGCTCCTGCCGGGTGAGATCAACATCGCAGCTTCTGATGCTCTTTCTCCTCCTGGAATGAAAGGCTCTTCTCAGTTTTACAGTCCGCACCGCCGCAGGCCTGCAGAGTCCAGTATAGATCCACTGCCCAAAAAGAGGAAGGTTCCTCACGGCCTGCCGACGTCCATATCGGCGTATCCAGGCTCTACTGGTGACGATTATAACCAGGACAGCGCCGGATACCCCGGATCCAAACCTGGAAACCTTTATCCAGGCTTTTTTAATGTGCAAGAAGGACTTCCAGATCATTGGGGTCAGTCTGGATATCCTCCGGTCATGAGCAACTTCATAAACCCACAGAAGCGTCAGCCGCTGCCGGTGTCTCCGCAGAATTACCCTCTTCACGGCAGCGAGGTCAATTTACCCTCCAGCTTCCACTCGGTTCCTGCAGGTTACGGCGTTCCCAACCACACACCACCCATCAGCTCCAGCGAAGGCATCATGGGAAACAGAGGAGCAAACGCTGGCAGCTCCGGTGCAGAGATCGGGAAAGCTCTGGCTTCGATATATCCATCAGACAATAATGGCAGCAACTTCTCCTCGACGCCGTCCACTCCTGTGGGCTCTCCTTCTAATGTGGCCGcCTCTGCATCTCAGTGGCCCAAAGGCTCCTCTCAGCCTGCGCCATCGCCTGGTTTTGAAGCAGGATTGGcacag
>TCONS_00033150
GGCCTTTATCCTGTCAGGGTTATTCTGGCTCttctgtatgtttttattttagtctgCGTCCTAATTTTGGACTTTCCCTTGAGTCAGGATTGGTTCTCTGATCTGGGATGAATGTTTCCTAATTTAATGCACATGCAGACATTCTGTGGCTGAAGCAAAACCACATCTTCTGGATGATCACGTCACATGCAAGAGCTCAATACAGCTTTTCCTTTCCTCTGTTTTCAGGCGTATCCAGGCTCTACTGGTGACGATTATAACCAGGACAGCGCCGGATACCCCGGATCCAAACCTGGAAACCTTTATCCAGGCTTTTTTAATGTGCAAGAAGGACTTCCAGATCATTGGGGTCAGTCTGGATATCCTCCGGTCATGAGCAACTTCATAAACCCACAGGTGAGCTCATCTCTGAATGTGTTTTGGGGATTAAATTCAAGTTTCTAAAATACCCGCATGATCTCAGATTCATTTGGTCAAAAAATATCTCCTAATGGAGTCATCTGGATATTTTTTCCCATTCTGATGAGCCAGAAACCGCAGAGAAAAATGCAGTTAATTACTTCAGAGCTTCATGTGGAAAAGCAATCAAACATTCCTGATGCTGAACCAGCGGATGAGAAATACTACATATACGAGGGTCAAAGACGAGACGTTCTGTTATGGCCAAATATATTCAATTCGTTAATTTTTACGgccaataaaatacaaaaacacacacgatGGTTctgttaaatgcttgattctgatttgcTAATGAGCATTCTAAGGTGTGCTATTATTttcagctaaagtagttccg
>TCONS_00033151
TACATTTGTAGCGCCCAAAATAATTAGAATAGAACTTTAAGCAGAGTTACATTTGAGCACTATTACATCGTAACACTTGTCGACGCGGACTGTTCGCGTCTGCCGGGAAATAGGACGCATTTTGCACCGTGATTTAGCGGGACCTGAGACACGGAGGGGGGAAATTTTGTCCCCCAACTTTTCTGTTTTTCCTCTCAGGCTGAAGCGCGTTTCTCTCCCGCTGGATGCCGCGCGCGTGACGCGAGAAACAGATCGTAAAGCTGTTTGAGCTGAAAGAAAGACGTCTATCAAGAGAAGCAGATCAGGATGGCGACGGTGGGGACCGACATGGAGCTCAATGACCTGTTGGATTTCAGTATTATGTTCCCTCATCCAATGTCAAACGGGAAAAGCAGAGGCCCCAATATACCCAGCAGTCAGTTCGGTAGGCACTTTTATATTCTCACTTCAACATGACTTGAGTAACTTTGACTCTGATTATAGAAACGA

Function

symbol description
tcf3a Enables sequence-specific DNA binding activity. Acts upstream of or within striated muscle cell development. Predicted to be part of transcription regulator complex. Is expressed in heart. Human ortholog(s) of this gene implicated in agammaglobulinemia and colorectal cancer. Orthologous to human TCF3 (transcription factor 3).

GO:

id name namespace
GO:0055002 striated muscle cell development biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0043425 bHLH transcription factor binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-51 Enables sequence-specific DNA binding activity. Acts upstream of or within striated muscle cell development. Predicted to be part of transcription regulator complex. Is expressed in heart. Human ortholog(s) of this gene implicated in agammaglobulinemia and colorectal cancer. Orthologous to human TCF3 (transcription factor 3).

Ensembl:

ensembl_id ENSDARG00000005915

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033147 False 2406 mRNA 0.53 18 57310523 57379216
TCONS_00033148 False 763 mRNA 0.54 10 57317508 57344037
TCONS_00033149 False 1197 mRNA 0.54 14 57317508 57378748
TCONS_00033150 False 799 lncRNA 0.41 2 57329205 57332270
TCONS_00033151 True 489 lncRNA 0.47 3 57369009 57378829

Neighbor

gene id symbol gene type direction distance location
XLOC_016979 si:ch1073-325m22.2 coding downstream 23265 57268781 ~ 57287258 (-)
XLOC_016978 mbd3a coding downstream 46189 57239978 ~ 57264334 (-)
XLOC_016977 btbd2b coding downstream 82981 57206248 ~ 57227542 (-)
XLOC_016976 NA coding downstream 106077 57203011 ~ 57204446 (-)
XLOC_016975 ARMC6 coding downstream 167046 57121596 ~ 57143477 (-)
XLOC_016981 NA coding upstream 21780 57400996 ~ 57405728 (-)
XLOC_016982 map2k2b coding upstream 37628 57416844 ~ 57443210 (-)
XLOC_016983 NA coding upstream 54779 57433995 ~ 57434621 (-)
XLOC_016984 pias4b coding upstream 67889 57447105 ~ 57473991 (-)
XLOC_016985 NA coding upstream 111651 57490867 ~ 57580290 (-)
XLOC_016974 dre-mir-7148 non-coding downstream 207038 57103401 ~ 57103485 (-)
XLOC_016972 NA non-coding downstream 248588 57053019 ~ 57061935 (-)
XLOC_016971 NA non-coding downstream 425635 56809292 ~ 56884888 (-)
XLOC_016986 NA non-coding upstream 202455 57581671 ~ 57586197 (-)
XLOC_016988 NA non-coding upstream 351120 57730336 ~ 57752904 (-)

Expression


Co-expression Network