RNA id: TCONS_00033144


Basic Information

Item Value
RNA id TCONS_00033144
length 998
RNA type mRNA
GC content 0.54
exon number 6
gene id XLOC_016978
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57239978 ~ 57264334 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGAGTGAACTGCGAGTCGACTCGTTTGACTCGGAGACTCGCGAGTCAGAGTTCGTGAGGTGTGCTGGATAGAGAGCAGCGCGCGGCCGCTCTTAACCCCTAATATCCACCGATTCTCCTTCCAGAGACTCCGGGAAAATCATGGAGAGGAAAAGGTGGGAGTGCTCGGCTCTCCCGAATGGTTGGAAAATGGAAGAAGTGACCAGAAAGTCGGGCTTGTCCGCGGGGAAAAGTGATGTCTATTATTTTAGTCCAACAGGGAAGAAGTTCCGGAGCAAACCTCAGCTGGTGCGATACCTGGGGAAGTCGATGGATCTGAGCTCTTTTGACTTCCGCACGGGGAAGATGCTGATGAGCAAACTCAACAAGAACAGGCAGAGGATTCGCTCCGATCACAGCCAGAACAAGgGTAAACCGGATCTGAACACGTCTCTGCCAGTTCGACAGACGGCGTCCATCTTTAAACAGCCCGTCACTAAAGTCACCAATCACCCCAGTAATAAAGTCAAGACGGACCCCCAGAAAGCTGTTGAGCAGCCCAGACAGTTGTTCTGGGAGAAGAAGCTGAGTGGACTCAATGCGTTTGATATCGCGGAGGAGCTGGTCAAGACCATGGATCTGCCCAAAGGGCTGCAAGGTGTGGGTCCGGGTTACTCAGATAAGACTCTTCTTTCGGCTCTGGCCAGCGCTCTGCACACCAGCTCGGCCCCCATCACTGGTCAGCTGTCAGCCGCTGTGGAAAAAAACCCTGGCGTTTGGCTGAACACCACACAGCCGCTCTGTAAATCCTTCATGGTGACCGATGAGGAcatcagGAAGCAGGAAGATCTGGTGTTTAACGTGAGGAAGAGGCTGGAGGAAGCTTTGATGGCAGACATGCTGGCACACATCGAGGAAGCAGCCGGAGACGACAAAAAACCTCTGAGCGAAGACTCCGCGGAGGAGGAGATGGACACCGTATAGCtggaacagacacacacagccaatcagatgagag

Function

GO:

id name namespace
GO:0016581 NuRD complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0008327 methyl-CpG binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9077 Predicted to enable methyl-CpG binding activity. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Is expressed in blastomere and pharyngeal arch 3-7 skeleton. Orthologous to human MBD3 (methyl-CpG binding domain protein 3).

Ensembl:

ensembl_id ENSDART00000149508

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034001 lncRNA downstream 42776 57203011 ~ 57204446 (-) True XLOC_016976
TCONS_00034000 lncRNA downstream 185287 57053019 ~ 57061935 (-) False XLOC_016972
TCONS_00033427 lncRNA downstream 422263 56809292 ~ 56824959 (-) False XLOC_016971
TCONS_00033426 lncRNA downstream 591453 56642138 ~ 56655769 (-) False XLOC_016969
TCONS_00033999 lncRNA downstream 1117853 56125177 ~ 56129369 (-) True XLOC_016964
TCONS_00033428 lncRNA upstream 4451 57268785 ~ 57284712 (-) True XLOC_016979
TCONS_00033150 lncRNA upstream 64871 57329205 ~ 57332270 (-) False XLOC_016980
TCONS_00033151 lncRNA upstream 104675 57369009 ~ 57378829 (-) True XLOC_016980
TCONS_00034002 lncRNA upstream 136662 57400996 ~ 57404902 (-) False XLOC_016981
TCONS_00034003 lncRNA upstream 136662 57400996 ~ 57405728 (-) True XLOC_016981
TCONS_00033140 mRNA downstream 19680 57206248 ~ 57227542 (-) False XLOC_016977
TCONS_00033139 mRNA downstream 19680 57206248 ~ 57227542 (-) True XLOC_016977
TCONS_00033138 mRNA downstream 103745 57121596 ~ 57143477 (-) True XLOC_016975
TCONS_00033136 mRNA downstream 136745 57076083 ~ 57110477 (-) True XLOC_016973
TCONS_00033135 mRNA downstream 170535 57076079 ~ 57076687 (-) False XLOC_016973
TCONS_00033147 mRNA upstream 46189 57310523 ~ 57379216 (-) False XLOC_016980
TCONS_00033148 mRNA upstream 53174 57317508 ~ 57344037 (-) False XLOC_016980
TCONS_00033149 mRNA upstream 53174 57317508 ~ 57378748 (-) False XLOC_016980
TCONS_00033152 mRNA upstream 152510 57416844 ~ 57443210 (-) False XLOC_016982
TCONS_00033153 mRNA upstream 152517 57416851 ~ 57443210 (-) False XLOC_016982
TCONS_00033137 other downstream 143737 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 185429 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033120 other downstream 1204592 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033117 other downstream 1243427 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033116 other downstream 1264521 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033145 other upstream 4447 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033146 other upstream 4448 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033170 other upstream 676346 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033188 other upstream 1372342 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 1603775 58868109 ~ 58869453 (-) True XLOC_017015

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000077_00028798_00030551.mRNA True 516 mRNA 0.50 4 CI01000077 28798 ~ 30551 (-)