RNA id: TCONS_00033140


Basic Information

Item Value
RNA id TCONS_00033140
length 1770
RNA type mRNA
GC content 0.55
exon number 8
gene id XLOC_016977
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57206248 ~ 57227542 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTACAGGAGACAATAGCGGTCGGGTTCCGTGTTTAAATTTCTCGGTGCCCGGACCTTTGGGTAACAGTCAACCGAGCAACAGCCCTTTCGCATTGGCGGCGAGTCACGGAGGATCGGTCGGGGGCGGTGGAGGCTCTCAGGGGGTAACGAGACGCTCAAATCCTCAACCGGGGCCTCAGGCCCTTGAAAGCCCCGGTGTCGCGTCGGGACTTCCGCCGAACTTGATGAACGCTGTCCCGGCTGCCGCGGCGGTGGTGGGCCCGCTGGCTCCGGCCGCCTCGAACATGACAGGGAGCCCGTCTAACGCAGCGATGACACCGGCGGCCGCCACACACTCAGCCCTGTCCGCTCCACCAGCCGCTGCCGCCGTGCTTGTGTACCGGGAGCCTGTTTATAACTGGCAGGCGACGAAAAGCACCGTGAAAGAGAGATTTGCGTTTCTGTTCAATAATGAAGTACTGAGTGACGTTCACTTTCTAGTGGGTAAAGGAATGGGAGTCCAGCGGATACCTGCGCACAGGTTTGTTCTGGCGGTTGGCAGTGCAGTATTTGATGCCATGTTCAATGGAGGCATGGCCACCACGTCCACAGAGATCGAGCTCCCGGATGTAGAACCTGCTGCATTCCTTTCATTGCTTAAGTATGACATCTTATTTCCTTTTCGGCACGCATGCGTTACACTTTCCAGAAATATGCAGATCTTGTTTCTCCTCAGATTCCTGTACTCTGATGAAGTTCATATCGGACCCGAGACAGTGATGACGACTCTCTACACGGCTAAAAAATACGCTGTTCCGGCTCTAGAGGCACACTGTGTGGAGTTTCTGAAGAAGAACCTACGAGCGGATAATGCGTTCATGCTGCTTACACAAGCGAGGCTGTTTGATGAGCCGCAGTTGGCCAGTCTGTGTCTGGAGAACATCGATAAAAACACAGGAGACGCTCTGGCTGCAGAAGGATTCACTGATATTGATCTGGATACGCTGGTGGCAGTGTTGGAGAGAGATACTCTGGGTGTGCGAGAGGTTCATCTGTTCGGAGCAGCGGTCCGCTGGGCAGAAGCTGAAGCTCACCGGCAGCAGCTTCAGCCTACGCCGGAGAACAAGAGACGAGTGCTGGGAAAAGCCCTCAGCCTCATCCGCTTCCCTCTCATGACCATTGAGGAGTTCGCTGCAGGTCCTGCTCAGTCAGCCATTCTCACAGACAGGGAGGTCGTGAGTCTGTTCCTGCACTTCACGGTGAACCCTAAGCCACGTGTGGAGTTTATCGACAGGCCGCGCTGCTGTTTGCGGGGCAAAGAGTGCAGCATCACACGCTTCGGGCAGGTGGAAAGTCGCTGGGGCTACAGCGGGACCAGTGACCGGATCCGGTTCTCTGTCAGCCGCAGGATATTTATTGTGGGCTTTGGGCTTTATGGATCCATACACGGACCTACAGACTATCAGGTCAACATACAGatcATTCACACTGACAGTAACACAGTTCTGGGTCAGAACGACACGGGTTTCAGCTGTGACGGGTCTGCAAACACATTCAGAGTCATGTTTAAGGAGCCAGTGGAGGTTCTGCCCAACGTCAACTACACCGCCTGTGCTACATTAAAGGGTCCAGACTCGCACTACGGCACTAAAGGGATGAGGAAAGTCACTCACGAGTCTTCAGGCTCCGGCACCAAAACCTGCTTCACTTTCTGCTACGCCGCCGGGAACAACAACGGCACATCAGTGGAGGACGGACAGATCCCAGAAGTCATCTTTTACACGTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000182675

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034001 lncRNA downstream 1802 57203011 ~ 57204446 (-) True XLOC_016976
TCONS_00034000 lncRNA downstream 144313 57053019 ~ 57061935 (-) False XLOC_016972
TCONS_00033427 lncRNA downstream 381289 56809292 ~ 56824959 (-) False XLOC_016971
TCONS_00033426 lncRNA downstream 550479 56642138 ~ 56655769 (-) False XLOC_016969
TCONS_00033999 lncRNA downstream 1076879 56125177 ~ 56129369 (-) True XLOC_016964
TCONS_00033428 lncRNA upstream 41243 57268785 ~ 57284712 (-) True XLOC_016979
TCONS_00033150 lncRNA upstream 101663 57329205 ~ 57332270 (-) False XLOC_016980
TCONS_00033151 lncRNA upstream 141467 57369009 ~ 57378829 (-) True XLOC_016980
TCONS_00034002 lncRNA upstream 173454 57400996 ~ 57404902 (-) False XLOC_016981
TCONS_00034003 lncRNA upstream 173454 57400996 ~ 57405728 (-) True XLOC_016981
TCONS_00033138 mRNA downstream 62771 57121596 ~ 57143477 (-) True XLOC_016975
TCONS_00033136 mRNA downstream 95771 57076083 ~ 57110477 (-) True XLOC_016973
TCONS_00033135 mRNA downstream 129561 57076079 ~ 57076687 (-) False XLOC_016973
TCONS_00033133 mRNA downstream 321360 56811549 ~ 56884888 (-) True XLOC_016971
TCONS_00033132 mRNA downstream 449179 56679214 ~ 56757069 (-) True XLOC_016970
TCONS_00033141 mRNA upstream 12436 57239978 ~ 57264262 (-) False XLOC_016978
TCONS_00033142 mRNA upstream 12441 57239983 ~ 57264312 (-) False XLOC_016978
TCONS_00033143 mRNA upstream 19680 57247222 ~ 57264262 (-) False XLOC_016978
TCONS_00033144 mRNA upstream 19680 57247222 ~ 57264334 (-) True XLOC_016978
TCONS_00033147 mRNA upstream 82981 57310523 ~ 57379216 (-) False XLOC_016980
TCONS_00033137 other downstream 102763 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 144455 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033120 other downstream 1163618 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033117 other downstream 1202453 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033116 other downstream 1223547 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033145 other upstream 41239 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033146 other upstream 41240 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033170 other upstream 713138 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033188 other upstream 1409134 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 1640567 58868109 ~ 58869453 (-) True XLOC_017015

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00005870 True 3045 mRNA 0.60 8 CM030142.1 10913335 ~ 10917815 (-)