RNA id: TCONS_00033428


Basic Information

Item Value
RNA id TCONS_00033428
length 543
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_016979
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57268781 ~ 57287258 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAATGAACAACAGACATATAACCTCTTCTGTCTGCTTTTCCAGGGTCCCCAATCTTGTTTTCTGGGGGGGAGCAGGAGGTGTAGTTTTTGTCCACTTCACCGACTGGCGGCTCATCCTGGACTACGTTCCCTACATTAACGGAAAATTCAAGAAAGATGATTAGAAGGTCAGTGTTGTCTAGTGGACTGAAGATGGAGACGGGGCTCAAAACATCTGAATCAGACCCCTCTGTTCATCAGCTGCCAACAAACAGTGTGATATTTATTTCAGGAGCTTTGGATTGATTTGCCCTGGTGATCCTTCAGTGTGGATGTACACTCACTGATGTCCAACAATCAACATTGGCTGATGGAAAAGCAGGAGGTTTTTATTCGACAGCATCACTGTTTGATTCCTCTGAATCCTCCTGGAGTAAATACACCGTCAATCATTCTCTCGTTATGAATAACCTCTGCGCGGACCTGAGCTCTGTTTGATCGCTCTGTTGTGTTTTCCGTGTCATCTGCAGGTTGATGCGGTGCTTTAATAAAGTACTTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034001 lncRNA downstream 64339 57203011 ~ 57204446 (-) True XLOC_016976
TCONS_00034000 lncRNA downstream 206850 57053019 ~ 57061935 (-) False XLOC_016972
TCONS_00033427 lncRNA downstream 443826 56809292 ~ 56824959 (-) False XLOC_016971
TCONS_00033426 lncRNA downstream 613016 56642138 ~ 56655769 (-) False XLOC_016969
TCONS_00033999 lncRNA downstream 1139416 56125177 ~ 56129369 (-) True XLOC_016964
TCONS_00033150 lncRNA upstream 44493 57329205 ~ 57332270 (-) False XLOC_016980
TCONS_00033151 lncRNA upstream 84297 57369009 ~ 57378829 (-) True XLOC_016980
TCONS_00034002 lncRNA upstream 116284 57400996 ~ 57404902 (-) False XLOC_016981
TCONS_00034003 lncRNA upstream 116284 57400996 ~ 57405728 (-) True XLOC_016981
TCONS_00033154 lncRNA upstream 132348 57417060 ~ 57420639 (-) True XLOC_016982
TCONS_00033144 mRNA downstream 4451 57247222 ~ 57264334 (-) True XLOC_016978
TCONS_00033142 mRNA downstream 4473 57239983 ~ 57264312 (-) False XLOC_016978
TCONS_00033141 mRNA downstream 4523 57239978 ~ 57264262 (-) False XLOC_016978
TCONS_00033143 mRNA downstream 4523 57247222 ~ 57264262 (-) False XLOC_016978
TCONS_00033140 mRNA downstream 41243 57206248 ~ 57227542 (-) False XLOC_016977
TCONS_00033147 mRNA upstream 25811 57310523 ~ 57379216 (-) False XLOC_016980
TCONS_00033148 mRNA upstream 32796 57317508 ~ 57344037 (-) False XLOC_016980
TCONS_00033149 mRNA upstream 32796 57317508 ~ 57378748 (-) False XLOC_016980
TCONS_00033152 mRNA upstream 132132 57416844 ~ 57443210 (-) False XLOC_016982
TCONS_00033153 mRNA upstream 132139 57416851 ~ 57443210 (-) False XLOC_016982
TCONS_00033137 other downstream 165300 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 206992 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033120 other downstream 1226155 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033117 other downstream 1264990 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033116 other downstream 1286084 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033170 other upstream 655968 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033188 other upstream 1351964 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 1583397 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 1753483 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 1817457 59102169 ~ 59102252 (-) True XLOC_017022

Expression Profile

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