XLOC_017015 (fem1a)


Basic Information

Item Value
gene id XLOC_017015
gene name fem1a
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58868109 ~ 58869453 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033190
AGCCTGGAGATCATGAAGATGCTGCTGAAGTGTGACGCGCGCATGGAGCGGGACGGCTACGGCATGACACCGCTGCTGGCCGCCAGCGTCACCGGACACACCAACATCGTGGAGTTCCTGGTGCACCAGCCGCGCGCCAGCCGGGAGCAGCGCATCCACGCCCTGGAGCTGCTCGGCGCCACCTTTGTGGACAAGAAGCGGGACCTGCTGGGCGCCATGCGCTACTGGCGGCGGGCGATGGAGCTGCGGTGGGCAGGGGGGCAGGCGGGTGCTCTGGAGAAACCAACCGCGGGGCCCGCTGTGCCTGCCTACGACTGCAGCCGCGAGGTGTCGACAGCCGAGGAGCTGGGAGCGCTGATCACCGACCCCGACGACATGCGCATGCAGGCGCTGCTGGTGCGAGAGCGCATTCTGGGGCCCCGCCCACCCCGACACCTCCTACTACATCCGCTACCGCGGCGCTGTCTACGCCGACTCGGGGAACTTCGAGCGCTGCATCCGGCTGTGGAAGTACGCGCTGGACATGCAGCAGAGCAACCTGGAGCCGCTGAGCCCCATGACCGCCAGCAGCTTCCTGTCCTTCGCAGAGCTCTTCTCCTTCGTGCTGCAGGACCGCGCTAAAGGCACGCTAGCGGCGCGCGTCTCCTTCCAGGACCTGATGGGGGTGCTGAGCAAGAGCGTGCGGGAGGTGGAGCGGGCGGTGGCGCAGCGGGAGAGGCCCCCGGAGCCGCCGCAGTTCTCCAAGGCGCTGTCCATCatcctgcacctgctgttcctgcTGCAGAAgctgcgctgcggcccggagcagGAGCACCTGAAGCGCCAGACCGTCTACCGGCTGCTGAAGCTGAACCCGCGGGCGAGGGGCGGGCACACCCCACTGCACATGGCCGTGGACCGCGACACCACATCGGTGGGCCGCTACCCTGTGGGCCGCTTCCCGTCTCTGGCCGTGGCGAGTCTGCTGCTGGAGTGCGGCGCTGACGTGGACTCGCGCGACTACGACAACAACACACCGCTGCACATAGCGGCCGCTAACGGCTGCCCGGACATCATGGCGGCGCTGATCCGGGCCGGCGCACACTTCGACGCCACCAACGCGGCGCAGCAGACGGCGTACCAGCTACTGGAGGCGCAGAGCAGCGGCAGACACGCGCTACACCCGCTCAACCACACCACGCTACAGTGCCTAGCGGCCCGCGCCGTCACCGCGCACAGACTGCCCTATAAAGGGCTGATCTCAGAACAGATGGAGGCCTTCATCGAGCTGcactgaccacacacacatacactgacaaacacacacacacacacacacacacacacactggcctcCTGACTGCAC

Function

symbol description
fem1a Predicted to be involved in negative regulation of inflammatory response; regulation of ubiquitin-protein transferase activity; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of ubiquitin ligase complex. Orthologous to human FEM1A (fem-1 homolog A).

GO:

id name namespace
GO:0051438 regulation of ubiquitin-protein transferase activity biological_process
GO:0050728 negative regulation of inflammatory response biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5824 Predicted to be involved in negative regulation of inflammatory response; regulation of ubiquitin-protein transferase activity; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of ubiquitin ligase complex. Orthologous to human FEM1A (fem-1 homolog A).

Ensembl:

ensembl_id ENSDARG00000067966

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033190 True 1345 pseudogene 0.67 1 58868109 58869453

Neighbor

gene id symbol gene type direction distance location
XLOC_017014 NA coding downstream 2613 58862622 ~ 58865496 (-)
XLOC_017013 NA coding downstream 12226 58851970 ~ 58855883 (-)
XLOC_017012 ptprsa coding downstream 72415 58777364 ~ 58795694 (-)
XLOC_017011 NA coding downstream 104824 58758910 ~ 58763285 (-)
XLOC_017009 CABZ01081294.2 coding downstream 227465 58631830 ~ 58640644 (-)
XLOC_017016 NA coding upstream 16486 58885939 ~ 58902477 (-)
XLOC_017017 sugp1 coding upstream 45221 58914674 ~ 58919975 (-)
XLOC_017018 NA coding upstream 53169 58922622 ~ 58925516 (-)
XLOC_017019 CU914601.1 coding upstream 168742 59038195 ~ 59038312 (-)
XLOC_017020 NA coding upstream 206322 59075775 ~ 59083614 (-)
XLOC_017010 CABZ01081294.1 non-coding downstream 231317 58636676 ~ 58636792 (-)
XLOC_017006 NA non-coding downstream 426614 58436760 ~ 58441495 (-)
XLOC_017021 NA non-coding upstream 217011 59086464 ~ 59089435 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location