XLOC_017017 (sugp1)


Basic Information

Item Value
gene id XLOC_017017
gene name sugp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58914674 ~ 58919975 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033195
AGAAGCGTCAGATTCACAACACTTAGCGCGATGGAGTCCAGCGATGCAGctcgTGGAGGATGGAAAACCCACCAGAAGCTGAAGGTGATCATGAAGCAGGAGGAGCTGATCGCTCAGAAGAAGAGAGAGATCGAGGCCAGACTCAGAGATCAGGCCCAGCAGAACCACAAACACCAGCAGAACCACAAACACAACCTCAACCAGAACCAGAACAAAACCagcagCTCTCCTCCTCCAGATgctccttcatcatcatcatcttcttcttcttcatctaaTAAGTTTGTGAATGACGGCAGTTTCCTGCAGCAGTTTCTGAAGTTGCAGAGAGAGAAGAGCAGCACTGATGAAGGACCCGTCAGCCCCGCCCCCTGTGCTCAGAGCCAGTCAGCAGGCGGAGCACAGAAGCGCAGTATTCTGATTGGCAAGCGTCCGGGTCTGGGCGTCAGCAGCATGATCAACCAGTTCAAGAACTACTCGCAGACCAAGAAGAGCACATTACCTGCAGCCCGACCCAGTGTGTTCAGCTCACCTGACGATGAGGACGAGGACGAGGACGACACACACTTCCTGGAGATCAAAGTCTCTCCCCCAGAGGACGCAGATCAGCGGCTCATCATCCAGAAGATGGCGGCGTTCATTGCTGAGGGCGGTGTGGAGCTACAGAAGAAGGCCATGCAGGATTACAGGGACGACCCCACATTCTCGTTCCTGTTTGACAAGGGCAGTAAAGAGCATCTGTACTACAGGAAGAGGCTGGCGGAGCTCAGGAGAGAACAGTCTGCACAGTCTGATggtgagagacacacacacacacctgaaccaacactgtgtgaatgagtgaagagcgagtgtgtgtgtctgtctgttgaGTGTGTGTAGAGTGTATGAAGCTAGATTAATCTCATTAATAATTCACAAAACACATCATGTACACATGCATAGATGCACAAacagggttgggtcgatagacgatgccatggTCCATCCCTGATGGCTGAAATGCTGCTGCCCTGCTCTAGTCGCAGCACCAACCCGCTC

Function

symbol description
sugp1 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SUGP1 (SURP and G-patch domain containing 1).

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005575 cellular_component cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-070615-33 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Orthologous to human SUGP1 (SURP and G-patch domain containing 1).

Ensembl:

ensembl_id ENSDARG00000075936

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033195 True 1041 mRNA 0.52 6 58914674 58919975

Neighbor

gene id symbol gene type direction distance location
XLOC_017016 NA coding downstream 12197 58885939 ~ 58902477 (-)
XLOC_017015 fem1a coding downstream 45221 58868109 ~ 58869453 (-)
XLOC_017014 NA coding downstream 49178 58862622 ~ 58865496 (-)
XLOC_017013 NA coding downstream 58791 58851970 ~ 58855883 (-)
XLOC_017012 ptprsa coding downstream 118980 58777364 ~ 58795694 (-)
XLOC_017018 NA coding upstream 2647 58922622 ~ 58925516 (-)
XLOC_017019 CU914601.1 coding upstream 118220 59038195 ~ 59038312 (-)
XLOC_017020 NA coding upstream 155800 59075775 ~ 59083614 (-)
XLOC_017021 NA coding upstream 166489 59086464 ~ 59089435 (-)
XLOC_017022 NA coding upstream 173332 59093307 ~ 59120840 (-)
XLOC_017011 NA non-coding downstream 151389 58758910 ~ 58763285 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01069099_00000557_00004952 NA coding CI01069099 null 557 ~ 4952 (-)