XLOC_017012 (ptprsa)


Basic Information

Item Value
gene id XLOC_017012
gene name ptprsa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58777364 ~ 58795694 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033189
atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtGAACATCTATGTGGTGGTGGTTCCTCTGAAGAGAGGCAGAGGAGTGAACCGACAGCTGAAGAGTCCTGATGAGATGGACCTGGAGGAGctgctgAAGGACATCAGTCAAAAGCAGCGGGACCCACGCCAGCGTCAGGTGGACCTGCGGCGGGCATACATCACTGCCCGCTTCACGCCCGCCACCCTCCCTGCCTTCTTCACCCTGGGGAACCAGCAAGACTACGGCGGCTTCGACAACCGTGCGCTGGAGGCGGGACAGGAGTATGTGTTCTTCATCCTGGCAGAGCTCAACTCCACCACCGGGaagaTGTTTGTGGCCAGCCCGTACACAGACCCGGTGATCGCTCCAGACTCGGACCCGCAGCCGCTGGATGCCGGTGACGGCCTGATCTGGGTGGTGGGACCCGTGCTGGCGGTCGTCTTCATCATCTGCATCGTCATCGCCATCCTGCTCTACAAGAAGTGCGTCTCAacagcactcacacacgcacacatagacatAACGGCACTTACGTTCAGACACAAGCATaaaGTGatgcatggacacacacacacacatactcaacaCATGAGTCACCCGCCGATCCCCGTGTCTGAGCTGCCCGAGCACATGGAGCGCCTGAAGGCCAACGACAACCTGCATCTGTCGCAGGAGTACGAGtcgaTTGACCCTGGGCAGCAGTTCACGTGGGAACACTCCAACCTGGAGGTAAACAAGCAGAAGAACCGCTATGCTAACGTGATCGCGTATGACCACACACGCGTGATCCTGGCTCCAGTCGACGGCATTATGGGTAGTGACTACATCAATGCTAACTACATCGACGGCTACAGGAAGCAGAACGCCTACATCGCCACACAGGGGCCGCTGCCCGAGACCTTCGCAGACTTCTGGAGGATGGTGTGGGAGCAGCGGGCGGCAACGGTGGTGATGATGACCCGACTGGAGGAGAAATCacggGTGAAGTGTGATCAGTACTGGCCCAGTCGTGGCACAGACTCATTCGGGGCGGTGCAGGTCAGTCTGCTGGACACTATGGAGCTGGCCACCTTCTGTGTGCGCACCTTCTCTCTGCACAAGAACGGCTCTAATGAGCGCAGGGAGGTCCGTCAGTTCCAGTTCACCGCCTGGCCTGATCACGGCGTTCCCGAATATCCCACTCCATTCCTGGCATTCCTGCGCAGAGTCAAGGCCTGCAACCCACCGGACGCTGGACCCGTCATCGTACACTGCAGcgctGGCGTGGGCCGCACCGGCTGCTTCATCGTGATCGACGCTATGCTGGAGCGTCTGCGTCAGGAGCGAGCGGTGGATGTGTACGGTCACGTCACCCTGATGCGCTCGCAGCGGAACTACATGGTGCAGACGGAGGATCAGTACGGCTTCATCCACGAGGCGCTGCTGGAGGCCGTGGCCTGCGGGAACACGGAGGTGGCGGCGCGGAGCCTCTACGCCTACATACAGACGCTCACACAGACCGAGGCTGGAGAACACGTCAGCGGGATGGAGCTGGAGTTCAAGCGTCTGGCCAACTCTAAAGCACACACGTCCAGGTTCGTGAGCGCTAATCTGCCCTGCAACAAGTTCAAGAACCGGCTGGTCAACATCATGCCGTACGAAACCACGCGTGTGTGTCTGCAGCCAATCAGAGGCCTGGAAGGGTCCGACTACATCAACGCCAGCTTCATCGACGGATACAGGGCATATATCGCCACCCAGGGGCCGCTGGCGGAGACCACAGAGGACTTCTGGAGGATGCTGTGGGAGCACAACTCCACCATCGTGGTGATGCTGACCAAACTGCGGGAGATGGGGAGGgagaAGTGCCATCAGTACTGGCCTGCGGAGCGCTCGGCTCGATACCAGTACTTTGTGGTGGACCCCATGGCAGAATACAACATGCCGCAGTACATCCTGAGAGAGTTCAAGGTCACCGACGCCAGGGACGGACAGTCCAGGACGGTCAGACAGTTCCAGTTCACCGACTGGCCAGAACAAGGAGTCCCAAAGTCAGGGGAGGGGTTCATTGACTTCATTGGACAGGTGCATAAAACCAAGGAGCAGTTTGGTCAGGATGGACCAATCACAGTGCACTGCAGtgCGGGTGTCGGGCGTACAGGAGTGTTCATCACCCTCAGTATCGTGCTGGAGCGCATGCGTTACGAAGGCGCCGTCGACATCTTCCAGACCGTCAAGATGCTTCGCACGCAACGGCCGGCCATGGTGCAGACTGAGgaCGAGTACCAGTTCTGCTATCAGGCCGGGCTGGAGTACCTTGGGAGTTTTGATCACTATGCAACATAA

Function

symbol description
ptprsa Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within olfactory bulb development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head and nervous system. Orthologous to human PTPRS (protein tyrosine phosphatase receptor type S).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0099560 synaptic membrane adhesion biological_process
GO:0016311 dephosphorylation biological_process
GO:0021772 olfactory bulb development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020107-3 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within olfactory bulb development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head and nervous system. Orthologous to human PTPRS (protein tyrosine phosphatase receptor type S).

Ensembl:

ensembl_id ENSDARG00000110940

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033189 True 2343 mRNA 0.58 18 58777364 58795694

Neighbor

gene id symbol gene type direction distance location
XLOC_017011 NA coding downstream 14079 58758910 ~ 58763285 (-)
XLOC_017009 CABZ01081294.2 coding downstream 136720 58631830 ~ 58640644 (-)
XLOC_017010 CABZ01081294.1 coding downstream 140572 58636676 ~ 58636792 (-)
XLOC_017008 epb41l3b coding downstream 195701 58513535 ~ 58581663 (-)
XLOC_017007 APCDD1 coding downstream 304592 58444873 ~ 58472772 (-)
XLOC_017013 NA coding upstream 56276 58851970 ~ 58855883 (-)
XLOC_017014 NA coding upstream 66928 58862622 ~ 58865496 (-)
XLOC_017015 fem1a coding upstream 72415 58868109 ~ 58869453 (-)
XLOC_017016 NA coding upstream 90245 58885939 ~ 58902477 (-)
XLOC_017017 sugp1 coding upstream 118980 58914674 ~ 58919975 (-)
XLOC_017006 NA non-coding downstream 335869 58436760 ~ 58441495 (-)
XLOC_017003 AL954696.2 non-coding downstream 436847 58272078 ~ 58340517 (-)
XLOC_017001 NA non-coding downstream 564172 58212549 ~ 58213192 (-)
XLOC_017018 NA non-coding upstream 126928 58922622 ~ 58925516 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000424_00002217_00051722 NA coding CI01000424 null 2217 ~ 51722 (+)