RNA id: TCONS_00033177


Basic Information

Item Value
RNA id TCONS_00033177
length 3810
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_016999
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58173047 ~ 58183499 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtcatatatttaatttagtaaactgcaaaaaaatgctttcctTACTTGGAgcattgtcttgtttctagttaaaatataaaaaaaaacataaagcattttttagacaagcaaaaacaTATTCTGAAAATATGTTCTGAACTAATAAATCAATATCAagggagtttttccttaaaacaagcacaataatcttGTTTATGTGCAGGTATTGTTGGTGTGCTGCTTGCTTTTAGTTCTTGCCTTGTCAGTTTGGATATtaaacagtgttgccagatatagttGAAAGTTTCACACCCAAAAACTGTCCAAAACCCGCCAACATAGTtgattaataatttacatttacttCAGTCAGAATTTGACTTTCGACAACTGACTGCTACAGTACATACAATACAAGCAGTGACCATGTTAGCGACCGACACCAAACAGAAGCAAAAGCAACCACAACAGCAAAATGACGACACAACCTGATCACATCAAAaccacccaatctggcaacatTTATAATGTTTCACCACTGACTTCCTTCCTTTTATACCGCCTTTCCTGCTTTCAATTCTTTACTAGTGACTCTTTCTGACAGTTTAACTCGTGTGTAACATGAGATCTTTCTTCTGCAGAAGCACATGATTTAATGAAGATAATCAGGTGTTTCCACATTTACAGCAGTTCATTCGAGTTTGGCTTCAGATGGCGGAGTCAGTACGGCTAATAATAGTCTTGTTTGAATAATATTGATATTCAGGTTTTTCCTGGGTTGAGTTCAGCCGTGTATCTGGACAACAGGGATTTTATTGTGTTCAGTAAGTCCAGCCCATCATAAACCAGTCCACAAACAGGTTACAGTACAAACACACCTGACAGACCGAGGAAACATGAGCAACGAAGGAGGAAATAGTCGCCGGCGGTCAAACAGGATCTCAGCTAAGAGAACTGACAATAATGAGGGTAATGAAGGTGCTTGTTCACAGAATGATCTGCGTCTGGTTCTGCTGGGAAAAACCGGCGCAGGGAAAAGCGCAACCGGGAACACAATCCTGGGAGAGAAACGCTTCAATGATGATCTGAGCATGAGTTCAGTCACTAAAGAGTGTCAGAGAGAAAACACAAGCACTGAAGGACGAAACCTGCTGCTGGTGGACACACCTGATTTTACAGAAACAGATAAAACAATTGAGAAAATACAACAGTGCCTATCTCTGAGTTCTCCTGGTCCTCATGCGTTTCTTCTGGTTATACCGATAGAGAGATACACCGATGAACAAGAACGCATTGCAGAAATGATTCTGGAGATGTTTCATGAAGACATCAGCCGATACACCATCCTCATATTCACACACGCTGACAGACTTAATGGAGGATCCATTCAAAAGTTCATAATGAATCAAGAGCAGAAGATACAGGAGCTCGTGGAGAAATTCGGAAGCCGTTTCGTGGCcttcaacaacaaaaacactgaaaaccGAGAACAAGTGACACGACTCCTTCAGAAAGTGGATGAACTGATGATCCAGAATGAAAACCGTCACTTCAGCAGTTCAATTTCAGATGTTGTACAGGAAACCAAGAGGATAATGAAGGAGAAAAGAGAAGCCGATGTTGCTGAAAGGAAGAAGAAAGTCAAAAAAGAGGTGAGAAAAATGGCTGAAGCTCGCTGGTCTGCGTTTACAACATCCTTGAAGGAGGAGAAacaagaaattgagaaaaaaaggaCAATCATTAATGGGCGGTTTGCAGAGATTGAGATGGATATAAAGAAGGAAGAGCGGAATGCTAAACCGATACCGGCGAGGCTCAAGCGATTCCGATCGTCTCTCAAAGCTGAGTTGGAGAATATTAGAAAACTGAATGATCGGGATAGAAAGGAAGAGGAAGAGAGATTGGAAAGATATGAGAAGGAAAAGAAGAATAAGGCCATTTGGATTAATGAGGAGGAACAGAGGAGGCTGGGTAAAGCAGGCCAGGACAAACAACTTCATTCAGAACACTATAACACAATCCTTTGGATCCTGGTTGGCTTCTTTGTTGGATTAGCAGTAGGATTTGCATCTTCAGCACTCTTTTCTCAGCAATATAGGTTGGATTCTCAGGAAAGTTCTTGGCAGTGGTGGTAGGAACTGTGTGTATTAAGGCTCTGGTATACTTCAAACCTAggtctttttcattttttgattGAAGCCAAAAataaggatgctttcacacctcaATGTTTGCTAGGGAACTTGACACGTTTGCCCATCAGCTCAGTTAGTTTGGGCTTACAgtatgtaaacactgcaatcatgctctgatccgcgccaaaacaatagGTCTGAGATTGCCTGAAAGAGGTCTGGGCTTGGTTGAAACAAAttctggagcggtttgtttgttgAGAGAAAGCATTATGATCCAACGAACTATTGAActagtgtattatggatatgtaataggcatacagtgcatccggtattgatagcgcttcactttattcatatgattttatgctacagccttattccaaaatggactaaacttattgatttcctcaacattctacacacaatcccccacaATGACCAtgtgaaaaagagtttttgaaattgttgtaaatttgtaaaaaataaaaagctgataaatcaattcaattgtttattgtcatgtgcacagtaagggAACACGTTTCCTtgtacaatgagattcttactttgccgtccacagtaAAGTCATACACAgaacatacacatcatacacgacatacacataaatacacatatatacacagaagtgactgaagtataattataaaatgtaagtatatacatatctatgaaagtaaacaatatataaaactgattttgGAGTACTGAAACAGATTTAAACAATGTATAGTggttcttaaagggtcacgaaacaccagaacacatgtgttgagctgttgacagtcgtatatgtgtcccacactgctaaaaacactattaggacacctatatttcactaaaaagtgttaattagttgtttttgcgttatttcaagcaaattcgtacttccggtttgaaacaaatttttgaagctgcgtcacggtcatgacataatagcgtgtattccagcgtgcagactggacgtctgtgccagagtgagtcttattacgtcttacagtgtgatgcattaatgcatgagtaaggcttggttcaaaccaatcagcgcgctctattgtgcaacttcattaatattcattactgtcacagtgtttagacggcagagacgccacgttgtgttggcaaaacaagcgtgaagtgttgcttttatagtttgctgcagtgaagttttgttttcattttctctgtgagagctcagctggagtaacgtgtggattaacagtgtacgcgacgctcgacaacaataacttacgtgtctaaggaggattattgtttacctgagagctgttctcatctgcaaacgctgagatccggattcgcttgtagtctcctcttaataaagacgcggctctagttgctggtgattgttctgtctctacagatttggtaagtgtgtgaccagtgctctttgtttattcagtttgttcgtaacgaactattgcaccgagtgtaaacatgttagcaccacaaccaaactttaacctcgtgtaggattttcaccacatttagtgaccggaacaacacacgcagctttctgacgctacctgctgtgtgcatctaagtttccggaaaatgcagaggttttttttctctcattcgctgtgcggtatcaaacattgcatgaaaaatacacgcttagagcagctcctcgaatcaaatatctcatttgtcg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000186262

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033431 lncRNA downstream 69371 58091219 ~ 58109574 (-) False XLOC_016997
TCONS_00033432 lncRNA downstream 69371 58107174 ~ 58109574 (-) True XLOC_016997
TCONS_00034011 lncRNA downstream 69787 58090321 ~ 58109158 (-) False XLOC_016997
TCONS_00033163 lncRNA downstream 341127 57830325 ~ 57837818 (-) True XLOC_016990
TCONS_00033162 lncRNA downstream 347804 57828710 ~ 57831141 (-) False XLOC_016990
TCONS_00033433 lncRNA upstream 3395 58186894 ~ 58201176 (-) False XLOC_017000
TCONS_00033434 lncRNA upstream 29050 58212549 ~ 58213192 (-) True XLOC_017001
TCONS_00033181 lncRNA upstream 88579 58272078 ~ 58292317 (-) False XLOC_017003
TCONS_00033435 lncRNA upstream 92214 58275713 ~ 58340356 (-) False XLOC_017003
TCONS_00034012 lncRNA upstream 93863 58277362 ~ 58340268 (-) False XLOC_017003
TCONS_00033175 mRNA downstream 36091 58115123 ~ 58142854 (-) True XLOC_016998
TCONS_00033174 mRNA downstream 93501 58077662 ~ 58085444 (-) True XLOC_016996
TCONS_00033173 mRNA downstream 103531 58026496 ~ 58075414 (-) True XLOC_016995
TCONS_00033172 mRNA downstream 187307 57989402 ~ 57991638 (-) True XLOC_016994
TCONS_00033171 mRNA downstream 187904 57953239 ~ 57991041 (-) False XLOC_016994
TCONS_00033178 mRNA upstream 3347 58186846 ~ 58201173 (-) False XLOC_017000
TCONS_00033179 mRNA upstream 3547 58187046 ~ 58193381 (-) True XLOC_017000
TCONS_00033180 mRNA upstream 72777 58256276 ~ 58257624 (-) True XLOC_017002
TCONS_00033183 mRNA upstream 161658 58345157 ~ 58374842 (-) True XLOC_017004
TCONS_00033184 mRNA upstream 231099 58414598 ~ 58417838 (-) True XLOC_017005
TCONS_00033170 other downstream 237082 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033146 other downstream 891687 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 909787 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033137 other downstream 1075460 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 1117152 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033188 other upstream 453177 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 684610 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 854696 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 918670 59102169 ~ 59102252 (-) True XLOC_017022
TCONS_00033216 other upstream 1152282 59335781 ~ 59336963 (-) True XLOC_017033

Expression Profile

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