RNA id: TCONS_00033179


Basic Information

Item Value
RNA id TCONS_00033179
length 864
RNA type mRNA
GC content 0.56
exon number 5
gene id XLOC_017000
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58186846 ~ 58201176 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACAGCTATGAGGAGTGTAAGGCCACAGCTGATTGGCTGTTAGAGCGAGCTCCGGAGCGCCCTCTGGTGGGCATCGTGTGCGGCTCTGGTCTGGGTGGATTGGCCAAAATGCTGAAAGATGAGCTGGTCATAAACTACTGCGACATCCCAAACTTCCCCCAGAGCACCGTGCACGGCCACGCTGGAAAGCTGGTGTTCGGCACACTAAAAGGAAAGCCGTGTGTTTGCATGCAGGGCAGGTTTCACCTCTATGAAGGATACGCTATTCAGAAGACCACCATGCCCATCCGGGTGTTCAAGCTGATGGGTGTAGAGACCGTCATTCTGACCAACGCTGCTGGAGGACTCAACCAGGACTTTAAAGTGGGCGACATCATGATCATTAAAGATCATATCAATATTCCAGGATTCGCCGGACACAACCCGCTAGTGGGAGCCAATGACGACAGGTTCGGCGTGAGGTTTCCGTGTATGTCGGATGCGTATGACCGGGATCTGCAGCAGCTGGTGCGAGCCGTGGCAGATGAGCTGGATTTCTCAGTCTTCATGCGGGATGGGGTGTACAGTGTGCTGGGCGGCCCGTCCTTCGAGACCATCGCTGAGTGCAGAGCTCTGCGCCAGCTCGGAGCCGACGCCGTGGgcatgAGCACTGTTCATGAGGTGATCGTGGCGCGTCACTGTGACATGCGTGTTCTGGCTCTGTCTCTGATCACCAACAAGGCAGTGATGGATTACCAGAGCGAGAAGAAGGCCAATCATGAGGAGGTTCTGGAGACGGGAGCGCTGAGGGCCAAGCAGATGGAGAAACTGGTGTCCACCGTCGTCTCTCGCATCCCTAACACACCCACACACTgctcataacac

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016763 transferase activity, transferring pentosyl groups molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-54 Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000159040

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033431 lncRNA downstream 77472 58091219 ~ 58109574 (-) False XLOC_016997
TCONS_00033432 lncRNA downstream 77472 58107174 ~ 58109574 (-) True XLOC_016997
TCONS_00034011 lncRNA downstream 77888 58090321 ~ 58109158 (-) False XLOC_016997
TCONS_00033163 lncRNA downstream 349228 57830325 ~ 57837818 (-) True XLOC_016990
TCONS_00033162 lncRNA downstream 355905 57828710 ~ 57831141 (-) False XLOC_016990
TCONS_00033434 lncRNA upstream 19168 58212549 ~ 58213192 (-) True XLOC_017001
TCONS_00033181 lncRNA upstream 78697 58272078 ~ 58292317 (-) False XLOC_017003
TCONS_00033435 lncRNA upstream 82332 58275713 ~ 58340356 (-) False XLOC_017003
TCONS_00034012 lncRNA upstream 83981 58277362 ~ 58340268 (-) False XLOC_017003
TCONS_00034013 lncRNA upstream 96486 58289867 ~ 58340268 (-) False XLOC_017003
TCONS_00033176 mRNA downstream 3547 58173047 ~ 58183499 (-) False XLOC_016999
TCONS_00033177 mRNA downstream 3547 58178945 ~ 58183499 (-) True XLOC_016999
TCONS_00033175 mRNA downstream 44192 58115123 ~ 58142854 (-) True XLOC_016998
TCONS_00033174 mRNA downstream 101602 58077662 ~ 58085444 (-) True XLOC_016996
TCONS_00033173 mRNA downstream 111632 58026496 ~ 58075414 (-) True XLOC_016995
TCONS_00033180 mRNA upstream 62895 58256276 ~ 58257624 (-) True XLOC_017002
TCONS_00033183 mRNA upstream 151776 58345157 ~ 58374842 (-) True XLOC_017004
TCONS_00033184 mRNA upstream 221217 58414598 ~ 58417838 (-) True XLOC_017005
TCONS_00033185 mRNA upstream 251492 58444873 ~ 58472772 (-) True XLOC_017007
TCONS_00033186 mRNA upstream 320154 58513535 ~ 58581663 (-) True XLOC_017008
TCONS_00033170 other downstream 245183 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033146 other downstream 899788 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 917888 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033137 other downstream 1083561 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 1125253 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033188 other upstream 443295 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 674728 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 844814 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 908788 59102169 ~ 59102252 (-) True XLOC_017022
TCONS_00033216 other upstream 1142400 59335781 ~ 59336963 (-) True XLOC_017033

Expression Profile

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