RNA id: TCONS_00033183


Basic Information

Item Value
RNA id TCONS_00033183
length 4265
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_017004
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58345157 ~ 58374842 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctttattttttttatttttttttttcattgtaaatatGTACAAACTATGTTCAAGAATATTGAGGACTTTTGTTTGCGAAGTGGCGCTACATGTCGCTCTACGTCATCACGCTGCGTCGGCTACTGCTGTACACATGTGAGCAGAAGCAGACCTGAGGCAGACTGGTGATGTTGGAGAAGATGCAGGCTGCAGGAGGTCAGAGGAGCAGTAAGAATGATCAGAGGGCTCGTAAGCGCCCCCAGCAGGCCTCCAGCGGGGCGGGTCAGCTGAAGCGAGAGCGTCTGGACGGCACTACAGTGGGATACTTCAGACGCGTCACGGAGAGACTCAATGAGGGATTCACAGATCCAGAGGAGAaagCTCTGTTTGTGGAGAACGTGCTGTCGGAGGTAAAGGGTAAAGCGCGGCTCGTGGCTCTGGACATGACTGGAAGTGTGGCTCTGGAGCGGCTGCTCTCATTGGCCGATGCGGGTCAGGTGGCGGAGATGATGTCAGAGCTAGGTGGGGAGGCGGGGTCAGAGTTTAGGGGCGTGTCCTGTGATCAGTGCGGAGGTCATGTGATGGAGAGCGCGCTCAGACAAGCTCACCGCTGGACAGaggAGACGCCAGCAGAGGAGAACCCTGAAGAGGAGCATTGTGGGATGCTGGAGACTCAGGTTCAGAGTTTGAGTCGAGCAGTACGAGAGAAAATCACAGAGTTCTGCACGGACCCGTACGGTTCACATGTGCTGCGGACGCTGATTCACGTGCTGAGTGGATGCCGGAGTGTAGAAACCACAGCTCCGCacgCCAAGAAGGACCGAAAGAGTAAGAGCGAGCTAATGGATTTTGAGATTCCCACATCGTTCTGGTGGGAGCTCAAGCATCTGGCCGACTGTCTGATGGTCAACATTAAAGtgtgtgtgtcgAACCAGTGTGCCGGCGTGGCTCTGCAGACTCTGCTGACGGTGTGTCACAGGAAGAGGCCCATTCTGTGCAGGAAGCTGAACAAGAGCATCATGGGATACCTGACATCTCTGAGCTCAGCTCCTGGAGTCAGTCCTCTGCTGGTGTTCCTGAAGGACCCGTCCAGCAGTCACCTCCTCCAGAGCGTCTTCAGCTGCTCCCATGATGCTCTGCTGCGAAACTTCTATAAGAAGCACCTGAAGACACACATGATGACTCTGGCTCTGCATCCCATCGCTAACTACACCGTGCAGAGCCTGATCGCAGCCGCAGCCGGAGCGGGGTCACGAGTGCTCCCGAAGATCCTGGATGAGCTGCTGGAGGGTTTCGAGGCGGTTCTGGCTGCGGGTCACATGGGTGTGGTGGTGCAGATGGTGGAGAGCTGCGTTCACTGTGTGGAGAAGCAGAGCGAGATGATGCAGCGCCTCCTGCAGGCCTTTCACTGCAGTGAGCCGGCGTCTCTGCAGCTCTGCTGTCTGCCGCTGTTCCTTTCTTTACTGACGCATGAGGTGTATTACAACACTGAGACAGCAGAGGGAGACACCGCAGcacagCCTCCACAGCGCCCCCTATCGGTCAGCTATCATGGCTCCCGGCTGGTCCAGGCTCTGTGTGGGTTCAGAGATCGCTCCATCCTCATGAACAGCCTGCATTCGCTGAGCTCCGCTGATCTGCTTTCTCTGGGTTGCGATCGCTCCGGCAGCCATGCGTTACAGGCCCTGATGACCAGCGGCAGCGACAAGGGCAGAGCCAAGATTCTGCGCAAGATGCAGGACATGTATGTGGATCTGGCATGTTCAGCGTGTGGCAGTCGACTGCTGGAGGCCGTGTGGAGCAGCGCCACCGTCAGCCAGAAGCAGAGCATTGCAGAAAAACTGGTCCCCAGTGAGAGTCGTCTGAGGTCTGATCAGTTTGCACGACACATTTGGGCGAAATTCGGCCTAATGAACTTTCTGAAGAggcgatctgattggctggaggCACAGAGCGGAGAATCCAGGAAGAGGAAGATGTTCAGCGAATTACTGAAGGATTAATTCTCACCATTACACATCATCTAATCAGTTCATCTGAATGACTCGTTCAGTCGCTTTTATTGCTTTGATGCTgcgttttataaataaaaacatccaaaacatAACTGGATGCAGCTGtgcacaattataaataaatatatacgttTCAAATTAAGGGTTTTTAATATTGTTCTGATGTGAAATCAAGCTAGATCCTCAAACAAAGTGCAAATGTATTTCAGGAATTAATAGTAAGGATTACATTTTTCAAGACTTTTAATATGACTTCGGGGTGGGGGTAATTATTTGAAATGAATATGCCATTACTTTCTTAGCTTTTGAGGGGTGACTTTTTTATAAGATTAAAAGACTTAACAGTTTTTAAGCAAATGACTCatgaatgaaataatatttaattcatatttttttttaattatcaaataacttggggggggggggggtattttttAATTAAGATTTAATTCATATTAATCAATGCACTTTTggtaaaacttaatttaatttttaattaatttctaataatgaacattttcatCAGACTTGAATCATATTTTGTAATAACATCAgacaaaaattaatataatattagtaaTTAATATAATAGGGTGACATGATTAGCACAGctaaaaggttgctggttcgagtctcggctgggtcagttggcttttctctgtgggtttcctcagggtgctccacaatccaaacacatgcgttacaggggaattgattaactacaattgccgtagtgtgtgtgaatgcgtgtgtatgggtgtttcccagtactgggttgcagctggaagggcattcactgtgtaaacatgctggaatagttggcggttcattccactgtggtgaccgctaataaataagggattgagccgaattaattaatgaataattaatgtaatattatgtattttttcaattttttcttAACATTACTTTTGAAGGgatcatttattataatttctgAATTAATACTGTAATATCTTCATTAAATTGTTAGACTATTAGtgcatgaattaaaatgaatgaaaaaatattagTTATTTCTAAACTAATAACATGGAACAAGTTATTGGagttattaatgttaattaagGGTGTTATCAATTAATATTGATCAATTAAGTCAAATTTTCAACAGTGGAGGGAAAAAACTCATGAAGaaacattaataaatgattattttgtaTGTAGTCAGATAGCTTTGTAagaaatgagtgtgaatgtgtgagcgGTGTGTGTGAAGGTCAGGCTGTGCGGCTGCAGCTGCTGCTTTATCTGTGTGGGAGAAAAACAGGAGGATCCACAGACTGAACTTCAGGACGACGTGACATTCAGACACAACCATACAGctgatagacacacacacacacacacacacacacacacacacacattcagatcaTTTTGATTCAGACACACATTCAGATCCTCTTCATGCAGACACAACCATACAgctgatacacacacatatttagaTCCTCCTGATGAAGACACAACCATACTGCTGATAGACAGACACACTCacgaattatatatatatatatatatatatatatacacacacacacacacacactactcacACATACATACTTTCAGATCCTCCTGATGCAGACAAAGCCATACAGCCTATAGagacacaagaacacacacaaatacaataaTAGTTGACAATGTCACAGTTGACGATATCACGTTTaatagtaacagagttgacgatatcactGTTGACAACAGTAATAACAAAGCTGACAATATCACAGTTGACGATATCGCAATTGATAGTAACAGTTGCCGAAATCACAGTTGACGATATAAAGTTTGATTGTGACAGTTGAGGATATCACATTTGattgtaacagagttgacgaaaacACAGTTGACGATATCACATTTGTCAATAGCAATTGACAATATCACAGTTGATGATATCAGATTTGATAGTAACAGTGTTGACGATATCGCAATTCACAATAACAAAGTTGATAATATCACATTTGATGGTAACAGTCAGTGATATTACATTTGCCGATATCACATTTGATAGTAACAGAGTTGAAAATATCACAGTTTACAACACCAGTGTTGATGATATCACAGTTGACTATAACAAAATTGACAAAAtcacagttgacaataacagagttggcgATATCACAGTTGACAATAACAAAGTTGAAGAAATAGTTGACAATAtcacacttaataataataattccttacatttatgtagcgcttttctgggcactcaaagcgctttacacgatgggggg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000111651

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033182 lncRNA downstream 4640 58291571 ~ 58340517 (-) True XLOC_017003
TCONS_00033435 lncRNA downstream 4801 58275713 ~ 58340356 (-) False XLOC_017003
TCONS_00034012 lncRNA downstream 4889 58277362 ~ 58340268 (-) False XLOC_017003
TCONS_00034013 lncRNA downstream 4889 58289867 ~ 58340268 (-) False XLOC_017003
TCONS_00033181 lncRNA downstream 52840 58272078 ~ 58292317 (-) False XLOC_017003
TCONS_00034014 lncRNA upstream 61918 58436760 ~ 58440858 (-) False XLOC_017006
TCONS_00034015 lncRNA upstream 61918 58436760 ~ 58441495 (-) True XLOC_017006
TCONS_00033436 lncRNA upstream 384068 58758910 ~ 58763285 (-) True XLOC_017011
TCONS_00034016 lncRNA upstream 477128 58851970 ~ 58855883 (-) True XLOC_017013
TCONS_00034017 lncRNA upstream 487780 58862622 ~ 58863935 (-) False XLOC_017014
TCONS_00033180 mRNA downstream 87533 58256276 ~ 58257624 (-) True XLOC_017002
TCONS_00033178 mRNA downstream 143984 58186846 ~ 58201173 (-) False XLOC_017000
TCONS_00033179 mRNA downstream 151776 58187046 ~ 58193381 (-) True XLOC_017000
TCONS_00033176 mRNA downstream 161658 58173047 ~ 58183499 (-) False XLOC_016999
TCONS_00033177 mRNA downstream 161658 58178945 ~ 58183499 (-) True XLOC_016999
TCONS_00033184 mRNA upstream 39756 58414598 ~ 58417838 (-) True XLOC_017005
TCONS_00033185 mRNA upstream 70031 58444873 ~ 58472772 (-) True XLOC_017007
TCONS_00033186 mRNA upstream 138693 58513535 ~ 58581663 (-) True XLOC_017008
TCONS_00033187 mRNA upstream 256988 58631830 ~ 58640644 (-) True XLOC_017009
TCONS_00033189 mRNA upstream 402522 58777364 ~ 58795694 (-) True XLOC_017012
TCONS_00033170 other downstream 403294 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033146 other downstream 1057899 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 1075999 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033137 other downstream 1241672 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 1283364 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033188 other upstream 261834 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 493267 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 663353 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 727327 59102169 ~ 59102252 (-) True XLOC_017022
TCONS_00033216 other upstream 960939 59335781 ~ 59336963 (-) True XLOC_017033

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000417_00100571_00110009.mRNA True 2521 mRNA 0.56 13 CI01000417 100571 ~ 110123 (+)