RNA id: TCONS_00033182


Basic Information

Item Value
RNA id TCONS_00033182
length 908
lncRNA type lincRNA
GC content 0.43
exon number 3
gene id XLOC_017003
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58272078 ~ 58340517 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAATTTTAacacacaagacgtgtcactcgtatacttttgaatggggaaaagtgtaactgtctatatggtgaataaagccccgccttctagtacaggagccaatcagcgatcgctatatggcgaataaagcccgccttctagtacatgAGCCAATCTGTGATCGCTATAGAACGACAATTCCCCgggggaggggcttggactaaacgtgagtttctgcagattttgtgtgatgcGAACatatagaaataaaactaaagagacagctgttgtttaattttattggttattggtaatatgtaatgtaatcgtaatcttggcaagtagttttgaagaatttaatgtttccccattcagacagaatgcccgagcatactgcccgagaggcgtttcaaagatggccgccgcgTGAAAGGGACTAAAAGCAGCGCGGTGTGTTCGCTGGACTTCCGGTGTCATTCGCTTCCGATTAATCCAGCAGGTACTTCAAATCGCAAACAGGTTTCCCTGCACTGAGTGTTCTCTTCCTGCGTACGAGCTGCAGAAACAGGAGCACATCTTCTGAAGGAGAAACAGTCTTAACTCACAGTCCCGTCTGATTGTCTAACTTATGGACAAGATTTCCGCCGTCAGCGCTGATGATAGCAGTGGAGTGGGAGATGTTTTCATCCAGTCATCATGTTCCAGATACAGTCAGAAAACATCAAGTCCTGATGCTTTACTGAAGgtcagagtcacacacacacacacacacacacacacacacacaaacacactaactGTTATTGCATCGTCATACTATCTGTTATCTGACAATagaatagaaatatatatatatacagataccCTACGATGGTTTATTTCTGAAGATTTTGATGTAAGTTGCTCCTTCTGTGATCACCAAACTGAA

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0031012 extracellular matrix cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194093

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033434 lncRNA downstream 78379 58212549 ~ 58213192 (-) True XLOC_017001
TCONS_00033433 lncRNA downstream 90395 58186894 ~ 58201176 (-) False XLOC_017000
TCONS_00033431 lncRNA downstream 181997 58091219 ~ 58109574 (-) False XLOC_016997
TCONS_00033432 lncRNA downstream 181997 58107174 ~ 58109574 (-) True XLOC_016997
TCONS_00034011 lncRNA downstream 182413 58090321 ~ 58109158 (-) False XLOC_016997
TCONS_00034014 lncRNA upstream 96243 58436760 ~ 58440858 (-) False XLOC_017006
TCONS_00034015 lncRNA upstream 96243 58436760 ~ 58441495 (-) True XLOC_017006
TCONS_00033436 lncRNA upstream 418393 58758910 ~ 58763285 (-) True XLOC_017011
TCONS_00034016 lncRNA upstream 511453 58851970 ~ 58855883 (-) True XLOC_017013
TCONS_00034017 lncRNA upstream 522105 58862622 ~ 58863935 (-) False XLOC_017014
TCONS_00033180 mRNA downstream 33947 58256276 ~ 58257624 (-) True XLOC_017002
TCONS_00033178 mRNA downstream 90398 58186846 ~ 58201173 (-) False XLOC_017000
TCONS_00033179 mRNA downstream 98190 58187046 ~ 58193381 (-) True XLOC_017000
TCONS_00033176 mRNA downstream 108072 58173047 ~ 58183499 (-) False XLOC_016999
TCONS_00033183 mRNA upstream 4640 58345157 ~ 58374842 (-) True XLOC_017004
TCONS_00033184 mRNA upstream 74081 58414598 ~ 58417838 (-) True XLOC_017005
TCONS_00033185 mRNA upstream 104356 58444873 ~ 58472772 (-) True XLOC_017007
TCONS_00033186 mRNA upstream 173018 58513535 ~ 58581663 (-) True XLOC_017008
TCONS_00033187 mRNA upstream 291313 58631830 ~ 58640644 (-) True XLOC_017009
TCONS_00033170 other downstream 349708 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033146 other downstream 1004313 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 1022413 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033137 other downstream 1188086 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 1229778 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033188 other upstream 296159 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 527592 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 697678 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 761652 59102169 ~ 59102252 (-) True XLOC_017022
TCONS_00033216 other upstream 995264 59335781 ~ 59336963 (-) True XLOC_017033

Expression Profile

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