RNA id: CI01000092_01307631_01315805.mRNA


Basic Information

Item Value
RNA id CI01000092_01307631_01315805.mRNA
length 1735
RNA type mRNA
GC content 0.50
exon number 6
gene id CI01000092_01307631_01315805
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1307315 ~ 1315805 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGCCTGTGTCTGAAATGGACACGGGTCCGGTTGAAGAAAGCTCGGGGGGTCTTGAACGTTCAGACTGTCTTTGTCCGGTCTGTCTGGACATATTCCTGGAGCCGGTCACTCTGCCCTGCACACACACTTTCTGCAAACCCTGCTTTCTGGAAACCGTGGACAAGTCCAACATGTGCTGTCCGCTTTGCCGAAAACGTGTGTCCACTTGGGCACGACTCAACAGCCGGAACAAGACCTTGGTCAACATGGAGCTCTGGAGACGCATACAGGACGCTTTCCCCACTCAGTGTGAGCGGAGAGTGCAGGGAATTGACAATTGTGATGATGCTGTGCTGATTTCGAGACCTCGAGTATGTCAGCCAGGAGAGCTGAGGAAAGAGTATGAGGACCAGATCAGCAAGCTTGTGGAGGAGAAGCGAGCTCTGGAGGAAGCCGAGCGGAGAGCCAGTGAGGAGTACATCCAGCGCCTGCTGGCTGAGGAGGAGGAGCGTATGGCAGAGGAGAGGAGGAGGCAGGAAGAGCAACAGCTGGAGAATGATGAGAAACTGGCCAGATTGCTCAGCCAAGAACTGAATTCAGGACCAATCTCTGAGTCACCATGGAACGTCAAACCTGATGCTACGCCAGCTAAGAAGACAAAACCAAATATGGGGGATATTGAGAAGTTTTTGCGTCCAGTGTCTCATAAACAGCCAAGCAGTTCTGACAGCAGCCCAAACTCCTCTCTGATGGCTAATAAGGAGAACATTCTTAGCCCTCCAAAAACCCTCACAGCACCATCTGTGGAGGACACAGTCAAACAGACCGTGCCCGTACTGGACTACAATGGGAAACCCTCCACCTCCAACTTCAATCCCAGCTGCTCAGAACACACTTTTGTTTTTAACAGTCCTAACAGCAGCTCTTCGAAAAGGAAGAGTTCAGAGATAGAGCTTCTGAGTGAAGCCGATCTACACACTAAGAGGCCTTGTGCTGCTCCGCAGTGTGAATCTCCTTCAGCCAACAGCCCTTTCCTGTCTGAAATGGCGTGGCACGAAGAGACTGCACGGAGCCGCTGGCAGCAGGAAGAAGAGGACCGAAGATTGGCGATGCGACTTCAGAGGGAGCTGAACCGCGAAAACACAGTGGACCGCAGGAAGGGTTCAGCCGATAGCTATCAGCTCCGGCAAAAAAACACTCCGGCTTCCACAAGTACAAACTCAGATGTGGAGAGTGCGAAAAAGAACATTAGTACGTCACGGTCGACTGCGAGGAACAGCACGGGGCGCAGGGACGATGGGAAAACTGAAAAGAGACTGTCTGGAACAGTGGGATCCACCCCTGCGTCTTCTCCTTCAATGACGGTCCCGACTAGCTTGAAGAAGGGGGCGAAGCAGACCACCCTTACTGAGATGTTCCCCAACATGGGCAGCTGAATGATCCTCTGCTGCTTTGATCTGGTTCCTCAAACACCCCTCAGACTTGAAACAGATGTTAGTAGTTGCCGTGCTGCTACTAAAGAACGCCGTGTAGCCGTGTTCCGTTCTCTTGTTCGGTTTCTGCTCATATCATATGTTGCTAATACTCCTTCAGTGCCTTTCCAGAGAGGTCCATACTGTAAAGTCATGATAGTTTTGGAATGGTTTTCATTTTATAAGCATTTATAAAGTCATGACTAGCTTAGAGTTTGAAAAGTTGTGAATGCTGCAGAAGAAAATCTTTTTGTAAGCATTTTCACTTTGATTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345972 lncRNA downstream 17538 1289439 ~ 1289777 (-) True G304481
TU345968 lncRNA downstream 20760 1286228 ~ 1286555 (-) True G304477
TU345960 lncRNA downstream 34955 1272143 ~ 1272360 (-) True G304469
TU345959 lncRNA downstream 35365 1271623 ~ 1271950 (-) True G304468
TU345949 lncRNA downstream 75881 1231114 ~ 1231434 (-) True G304458
TU345975 lncRNA upstream 29488 1345293 ~ 1345613 (-) True G304484
TU345946 lncRNA upstream 30524 1346329 ~ 1346888 (-) True G304455
TU345978 lncRNA upstream 107784 1423589 ~ 1423791 (-) True G304487
TU345948 lncRNA upstream 156203 1472008 ~ 1481912 (-) True G304457
TU346007 lncRNA upstream 232433 1548238 ~ 1548482 (-) True G304512
CI01000092_01270604_01273133.mRNA mRNA downstream 34182 1269745 ~ 1273133 (-) True CI01000092_01270604_01273133
CI01000092_01266540_01267541.mRNA mRNA downstream 38836 1266358 ~ 1268479 (-) True CI01000092_01266540_01267541
CI01000092_01201434_01205306.mRNA mRNA downstream 100783 1199874 ~ 1206532 (-) True CI01000092_01201434_01205306
CI01000092_01186569_01191243.mRNA mRNA downstream 115782 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
CI01000092_01122961_01135673.mRNA mRNA downstream 171312 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
CI01000092_01317932_01336911.mRNA mRNA upstream 1969 1317774 ~ 1338546 (-) True CI01000092_01317932_01336911
CI01000092_01352766_01386659.mRNA mRNA upstream 36940 1352745 ~ 1386659 (-) True CI01000092_01352766_01386659
CI01000092_01451469_01485752.mRNA mRNA upstream 135664 1451469 ~ 1485752 (-) True CI01000092_01451469_01485752
CI01000092_01488880_01522758.mRNA mRNA upstream 173075 1488880 ~ 1522758 (-) True CI01000092_01488880_01522758
CI01000092_01562366_01575276.mRNA mRNA upstream 246243 1562048 ~ 1575276 (-) True CI01000092_01562366_01575276
TU345950 other downstream 75023 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 210397 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 248395 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 248451 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 1408789 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2362069 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3180609 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 3488590 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 3837863 5153668 ~ 5154133 (-) True G306902

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017688 False 5619 mRNA 0.43 7 NC_007126.7 4101254 ~ 4124099 (-)