RNA id: CI01000092_02134927_02166170.mRNA



Basic Information


Item Value
RNA id CI01000092_02134927_02166170.mRNA
length 3349
RNA type mRNA
GC content 0.32
exon number 2
gene id CI01000092_02134927_02166170
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2133818 ~ 2166547 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACAGTTCTCTAGCACATTAAAGAGGAAGCATTGGTGGTCGTTTCAAGTGTATTAGAGAAGGTATTTAAATTGTGCAATGTCTTTTTAGGATACTGGTTGTATTTTTGCCTGATATTGATTGAAAAATTAATTTTAAAGTTGTTGACACTTTGCGTGCACACTGTTAAACTGATAATATATCACACAGTAACTGTGAAGAAGGTAAGGTATCATGAACTAATAAATTGAACCTTACTAAATCCGACCTGTATATATGTAGAATAGACAAAAACAAAAGTTGATAACATATTGCTCATGTTTAAAATGTGCATAAATCATAAGATCTATGTCTGTTGTCTTAACTCAGGTCATTGAAGGCTATCTTTGCTTATCAGAAAATGGAAAATGGAACATATTTTTACTTCATGTTATTTGAAAATCTTGGGTACATAAGATATGCTTTCTTCAGTTTAGGATTTATTCTATACTGTGCTATCACACTATTTAATGCCATTATTGTGCTTGCAATATTTCTGGAAAGGACTTTACACCAGCCCATGTACATTCTGATTTCATGTTTGTCTGTCAACTCTGTGTTTGGAACAGCTGGCTTTTTCCCAAGAGTACTGACAGACTTGCTTTCTGATACACACTCAATCTCTCGTGAAGCATGTGTCTTACAGTCTTATGTCATTTTCACGTATGCAGCAAATGAAAATACAATATTAATGTTAATGGCATTTGACAGATTTGTTGCGATAAGTAAACCTTTGCAGTATTACAACATAATTACACCAAGATATCTAACTGTTTTAATATTTATAAACTTAACTTATCCAATGATTTCTCTTGGTACTTCTGCTATTTTGACTTCCAGACTGACATTGTGTGGTAACAAATTGTTTAAGGTGTACTGCCACAACTTTGAAATGGTTAAACTGTCTTGTGCAAACACTGCTGTTAATAATGTCATGGGCTTTTTTATATTGATCACAACTGTAATCATCCCATTAAGTTTTATATTATATTCTTATGTAAAAATTCTTATCATTTGTCGAAGAAGCTCAGCACAGTTCAAGAGCAAAGCGTATCAAACTTGTATTCCACACATTGTGATCCTTTTGAATTTTTCAATTGCCATTATTTCTGAGGTCACTTTGAGTCGGGTTGTGACTTTACAACTTCCTATATGGCTGTCAGTTTTACTTTCACTTCAATTTCTTGTTATACCACCCATCCTGAACCCTCTTGTTTATGCTGTAAACTTGCCCAATATTCGTAAAACAATTATCTGTCTTATAAATGGATCCAGGTCATTGAAGGCTATCTTTGCTTATCAGAAAATGGAAAATGGAACATATTTTTACTTCATGTTATTTGAAAATCTTGGGTACATAAGATATGCTTTCTTCAGTTTAGGATTTATTCTATACTGTGCTATCACACTATTTAATGCCATTATTGTGCTTGCAATATTTCTGGAAAGGACTTTACACCAGCCCATGTACATTCTGATTTCATGTTTGTCTGTCAACTCTGTGTTTGGAACAGCTGGCTTTTTCCCAAGAGTACTGACAGACTTGCTTTCTGATACACACTCAATCTCTCGTGAAGCATGTGTCTTACAGTCTTATGTCATTTTCACGTATGCAGCAAATGAAAATACAATATTAATGTTAATGGCATTTGACAGATTTGTTGCGATAAGTAAACCTTTGCAGTATTACAACATAATTACACCAAGATATCTAACTGTTTTAATATTTATAAACTTAACTTATCCAATGATTTCTCTTGGTACTTCTGCTATTTTGACTTCCAGACTGACATTGTGTGGTAACAAATTGTTTAAGGTGTACTGCCACAACTTTGAAATGGTTAAACTGTCTTGTGCAAACACTGCTGTTAATAATGTCTTGGGCTTTTTTATATTGATCACAACTGTAATCATCCCATTAAGTTTTATATTATATTCTTATGTAAAAATTCTTATCATTTGTCGAAGAAGCTCAGCACAGTTCAAGAGCAAAGCGTATCAAACTTGTATTCCACACATTGTGATCCTTTTGAATTTTTCAATTGCCATTATTTCTGAGGTCACTTTGAGTCGGGTTGTGACTTTACAACTTCCTATATGGCTGTCAGTTTTACTTTCACTTCAATTTCTTGTTATACCACCCATCCTGAACCCTCTTGTTTATGCTGTAAACTTGCCCAATATTCGTAAAACAATTATCTGTCTTATAAATGGATCCAGGTAAATGATTTATCTAGTATAATAAATAGGGTACATGAATAATCAATACCTGAATTAATACTTAATTCAACATGAACTAATGATTATTGAAGGCATGAACTAATCATGGACTGATGAAGAGCTATCCTTAACTACAGTTGGAGTCGTTATGGATTCATGCATGAATAACAGCAGCCTTAATTACATGTTAGTACGTTTGATAGTTCATGCATTAATTACAATTTATGACTAAACCAAATCAATCAGTCTCTTTAAGAAGGAATAAGAAGTACTCTGACTTTGAAACAAATTTAAATAATTTAATATTATCATAGTTTGAACTTTTGACTGCAGTTTTGTCATAAACATTACTGGATGGCACAGGATTAGTTGATCCTCCTCATCAAATGTAGAGAATACTAAATAAAATAATAACTGACCTTAAAAGGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATAAACATTACTGGATGGCACAGGATTAGTTGATCCTCCTCATCAAATGTAGAGAATACTAAATAAAATAATAACTGACCTTAAAAGGTATTTATCTGTTTTGTGGTGTTCTATTTCCCTTCAAACTCACCCTACTACTACTAAATAAGGAATAAAAATTCAAACCCCACAAAGAACATTTGTGGAACAGTTTCCAAAGAAACGGCCAAACTGGAATCATGGTCAGAGAGTTTGCTGGGTATCAGTAGAGTTCACTCTCCATCCAGACGCAGGCCGTGATGATACTGTACCTCCATTCTCTGACTTCTTGAAAAGCCACACAACATCTTTTAACTGGCCTGAATACTAATTGTGTTAGTACATGTGTATTTGACAGCAAGTTTATGATAAATCAGATGTATTTGTCAAGTATTTAAAAGTGAATTAATTATGATTGGGCCCCTTTAAGAAAAGTCATGACAAAATAATGCATTAACAAGGCATGAGCTGATGTTAGTGTATGGGTAGCTAATCATGAGTTAGTAATGATGTGCCCCTCAAAGTCATGACACGATGATGCACTAACAAATCATTAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU346315 lncRNA downstream 84486 2049125 ~ 2049332 (-) True G304795
TU346294 lncRNA downstream 128621 2004746 ~ 2005197 (-) True G304777
TU346284 lncRNA downstream 156599 1972782 ~ 1977219 (-) True G304769
TU346281 lncRNA downstream 168335 1965231 ~ 1965483 (-) True G304768
TU346280 lncRNA downstream 169331 1964432 ~ 1964487 (-) True G304767
TU346428 lncRNA upstream 65972 2232519 ~ 2232949 (-) True G304895
TU346431 lncRNA upstream 72190 2238737 ~ 2239195 (-) True G304898
TU346433 lncRNA upstream 73858 2240405 ~ 2241173 (-) True G304900
TU346435 lncRNA upstream 77884 2244431 ~ 2244630 (-) True G304902
TU346441 lncRNA upstream 92838 2259385 ~ 2259718 (-) True G304908
CI01000092_02072036_02082309.mRNA mRNA downstream 50038 2071728 ~ 2083780 (-) True CI01000092_02072036_02082309
CI01000092_02055330_02056247.mRNA mRNA downstream 77532 2055017 ~ 2056286 (-) True CI01000092_02055330_02056247
CI01000092_02043716_02044633.mRNA mRNA downstream 89146 2043391 ~ 2044672 (-) True CI01000092_02043716_02044633
CI01000092_02039063_02039980.mRNA mRNA downstream 93485 2038840 ~ 2040333 (-) True CI01000092_02039063_02039980
CI01000092_02026073_02027161.mRNA mRNA downstream 106293 2026062 ~ 2027525 (-) True CI01000092_02026073_02027161
CI01000092_02191463_02196322.mRNA mRNA upstream 24609 2191156 ~ 2196570 (-) True CI01000092_02191463_02196322
CI01000092_02408861_02410832.mRNA mRNA upstream 242034 2408581 ~ 2411486 (-) True CI01000092_02408861_02410832
CI01000092_02423345_02438711.mRNA mRNA upstream 256442 2422989 ~ 2438720 (-) True CI01000092_02423345_02438711
CI01000092_02463561_02465847.mRNA mRNA upstream 296576 2463123 ~ 2466249 (-) True CI01000092_02463561_02465847
CI01000092_02522204_02531634.mRNA mRNA upstream 355576 2522123 ~ 2531634 (-) True CI01000092_02522204_02531634
TU345950 other downstream 901526 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 1036900 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 1074898 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 1074954 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 558047 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1511327 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2329867 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2637848 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 2987121 5153668 ~ 5154133 (-) True G306902

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017725 False 1682 mRNA 0.32 2 NC_007126.7 5220992 ~ 5222924 (-)