RNA id: CI01000092_03086245_03088783.mRNA


Basic Information

Item Value
RNA id CI01000092_03086245_03088783.mRNA
length 1089
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000092_03086245_03088783
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3086208 ~ 3089118 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATACAAATTGCTCAAGCCAGAGGATTGGGCATTAGACTGTCAAATGTCATTGGAAAAGCGTAAAGAGGCTTTTCTGAAACACTATAGTTTTGGCTCACCCTGACTTCAGCAAGCCATTTCTTCTAATGACTGATGCATCCATTGATGTTAATGGTGAACTCAAACCAAGACCAATTGCATTTGCAAGCAAATCCCTAAGCTGCTCTCAAGCCTGATACCCATTACATCAGTTAAAATTCTTTGCACTTAAATAGGCAGTATGTGATAAGTTTCCTGATTGGTTAAAAGGGGCTCCCATCACAGTATTAAACAATAATAATCCATTGACATACATAATGACTAAGCCCAAGCTAGACACTTGCAAGCAATGGTGGGCCTTGAAGTTAGCACCTTTTGACTTTGACCTTAAGTACATTCCAGGATCACAGCACATTCCAGCAGATCTCCTGAGTTGTGAGCCATTTGCAAAAGTGGTCAGGTTTGCCATGGGGACACAAATGGCACCATTACTTGAGAATAACCCAAATGTCCCGCAAATGCAAATACAACTGACTTGTTGGGATAGTTCAGGCAAAAATAAAAATCTTGTCGAACCAGGCAACAAGGTGAATCACATGAGCTTTGAATCTGTTCATTATGCATTCATAATGCATTCAAGCTATCTGTCAGTTCTCAAGAGCAACATGATTGTGAGTATGAGAGAAGAGTCAGATAAGAATTGTCCCAATGCTCAAGCCATATGGTGTTTGGTCAGTTCACCCTTCCAGTGCTTTCTATTGAAGATACAAGGAAGAAGCAACGATGATGCATTATGGGTAATCTACTTCAAGAGAAAAAGATGGTCACGGATCCACTCAGACCAAGGAGCAAATTTTGAGAGTACGCTCATATCTAAGCTGCAGAAAAGTATCAGAAGTAAAGAAATCTCATACCACCCCCTACCATCCTATGGGAAATGGCCAAACAGAAAGTGGTATATTCCCCTGGTGCTGCACTCTTTAGCCTGTGGGAAGCACCTTGAGGAGAGTTTGTTAAACAGAAAACAGAGATGATTGTTGTAACACTCTGCCATTTTATGCTTGCAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347488 lncRNA downstream 2562 3051910 ~ 3083646 (-) True G305813
TU347573 lncRNA downstream 41255 3044742 ~ 3044953 (-) True G305898
TU347572 lncRNA downstream 41710 3044240 ~ 3044498 (-) True G305897
TU347571 lncRNA downstream 44007 3041986 ~ 3042201 (-) True G305896
TU347569 lncRNA downstream 44914 3041068 ~ 3041294 (-) True G305894
TU347492 lncRNA upstream 137716 3226834 ~ 3275358 (-) True G305817
TU347595 lncRNA upstream 218154 3307272 ~ 3307547 (-) True CI01000092_03307794_03308422
TU347598 lncRNA upstream 220975 3310093 ~ 3310299 (-) True G305922
TU347486 lncRNA upstream 267728 3356846 ~ 3357075 (-) True G305811
TU347480 lncRNA upstream 268249 3357367 ~ 3359859 (-) True G305805
CI01000092_02933754_02957495.mRNA mRNA downstream 128571 2933754 ~ 2957637 (-) False CI01000092_02933754_02957495
CI01000092_02902889_02909457.mRNA mRNA downstream 176719 2902812 ~ 2909489 (-) True CI01000092_02902889_02909457
CI01000092_02878710_02896014.mRNA mRNA downstream 189714 2878362 ~ 2896494 (-) True CI01000092_02878710_02896014
CI01000092_02868492_02873015.mRNA mRNA downstream 213193 2868473 ~ 2873015 (-) True CI01000092_02868492_02873015
CI01000092_02851435_02865690.mRNA mRNA downstream 220518 2850442 ~ 2865690 (-) True CI01000092_02851435_02865690
CI01000092_03103762_03184280.mRNA mRNA upstream 13987 3103105 ~ 3184280 (-) True CI01000092_03103762_03184280
CI01000092_03224848_03225687.mRNA mRNA upstream 135343 3224461 ~ 3225795 (-) True CI01000092_03224848_03225687
CI01000092_03271224_03274775.mRNA mRNA upstream 182106 3271224 ~ 3275286 (-) True CI01000092_03271224_03274775
CI01000092_03307794_03308422.mRNA mRNA upstream 218084 3307202 ~ 3308514 (-) False CI01000092_03307794_03308422
CI01000092_03365550_03416277.mRNA mRNA upstream 275889 3365007 ~ 3416277 (-) True CI01000092_03365550_03416277
TU347441 other downstream 361264 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 1853916 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 1989290 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 2027288 1058367 ~ 1058920 (-) False G304369
TU347691 other upstream 588756 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 1407296 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 1715277 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 2064550 5153668 ~ 5154133 (-) True G306902

Expression Profile