RNA id: TU346379


Basic Information

Item Value
RNA id TU346379
length 225
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G304853
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2125390 ~ 2161014 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGTTTATATTCAGTGAGCATATCTGCAATGTATTGAGGCCATTGAGTGATTTATAAACAAGTAACAGTACTTTAAAATCAATTCAAAATGCAACTGGAAGCCAGTGCAAGGACCTGAGGACTGGTGTGATATGTTCATATTTTCAGGTTCTGCTCAGAATCCTGGCAGCAGTGTTCTGTATGAGCTGCAGCTGTTTTATGGTCTTTTTGGGAAGGCCAGTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346315 lncRNA downstream 76058 2049125 ~ 2049332 (-) True G304795
TU346294 lncRNA downstream 120193 2004746 ~ 2005197 (-) True G304777
TU346284 lncRNA downstream 148171 1972782 ~ 1977219 (-) True G304769
TU346281 lncRNA downstream 159907 1965231 ~ 1965483 (-) True G304768
TU346279 lncRNA downstream 160746 1964055 ~ 1964644 (-) False CI01000092_01964262_01964863
TU346428 lncRNA upstream 71505 2232519 ~ 2232949 (-) True G304895
TU346431 lncRNA upstream 77723 2238737 ~ 2239195 (-) True G304898
TU346433 lncRNA upstream 79391 2240405 ~ 2241173 (-) True G304900
TU346435 lncRNA upstream 83417 2244431 ~ 2244630 (-) True G304902
TU346441 lncRNA upstream 98371 2259385 ~ 2259718 (-) True G304908
CI01000092_02072036_02082309.mRNA mRNA downstream 41610 2071728 ~ 2083780 (-) True CI01000092_02072036_02082309
CI01000092_02055330_02056247.mRNA mRNA downstream 69104 2055017 ~ 2056286 (-) True CI01000092_02055330_02056247
CI01000092_02043716_02044633.mRNA mRNA downstream 80718 2043391 ~ 2044672 (-) True CI01000092_02043716_02044633
CI01000092_02039063_02039980.mRNA mRNA downstream 85057 2038840 ~ 2040333 (-) True CI01000092_02039063_02039980
CI01000092_02026073_02027161.mRNA mRNA downstream 97865 2026062 ~ 2027525 (-) True CI01000092_02026073_02027161
CI01000092_02191463_02196322.mRNA mRNA upstream 30142 2191156 ~ 2196570 (-) True CI01000092_02191463_02196322
CI01000092_02408861_02410832.mRNA mRNA upstream 247567 2408581 ~ 2411486 (-) True CI01000092_02408861_02410832
CI01000092_02423345_02438711.mRNA mRNA upstream 261975 2422989 ~ 2438720 (-) True CI01000092_02423345_02438711
CI01000092_02463561_02465847.mRNA mRNA upstream 302109 2463123 ~ 2466249 (-) True CI01000092_02463561_02465847
CI01000092_02522204_02531634.mRNA mRNA upstream 361109 2522123 ~ 2531634 (-) True CI01000092_02522204_02531634
TU345950 other downstream 893098 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 1028472 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 1066470 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 1066526 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 563580 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1516860 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2335400 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2643381 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 2992654 5153668 ~ 5154133 (-) True G306902

Expression Profile