RNA id: TCONS_00019100


Basic Information

Item Value
RNA id TCONS_00019100
length 1179
lncRNA type read_through
GC content 0.38
exon number 3
gene id XLOC_008893
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 813096 ~ 815019 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgaatttaatgtttacaatgcaaatcctattagatCTATTTATTTGGTGAACAAGGAAAGTTTCtcataatatctctactaaaagacagaaaatatgactttacaaactgttctgtaaataaatcatataaatattataatattactattaatatatcacaataatattagtgaaattaatttaaaaactgaataaatataaatttgcacacatttacacatgtaaATACATGGACTCAATgatgcacgcgcagattccgtgtgggcctactcatgacCTGCGTCCTGCCTATGAAACTCCACACTAATGATTCCTGATTTGGTtgtcttagaatCCTCTCCTGAAAGATAATCAAGTTTTACGTTCTGAATCGTCTTCCACATTGAAAACAAACCCCCAGTGTGAATGTTCATGTGTCTTGAGAGATTTAAAGTTCTTGCCACAATCCACAGGTGTGAGGCTTCTAACCAGAATAAACCACCACATGAGAATCAAGGTAAAATCTATTTCTGAAGCTCCACAgtgtccacactgttggcatgttcAATGCTTCTCTCTTTAGTGTGAACTTTCCTTTTAAGGTGTCTTGTAAGATTTGTTTTAGTAGTGAAACTCTGTCCACACTGCTGGCAAGTGTACGGCTTTGTTCCAGTGTGAGTCCTCATATGTTCTGACAGGTTTTTTTTCCAtatgaaactctttccacagttCTGGCAGGTGAACGGCttttctccggtgtgaatcctcatgtgttctACAAAGTATTGATTCccgctgaaactctttccacactgttggcaggtgTACAGATTTTCTCCAGTGTGAAACTTCATATGTTTTGTAAGATTTTGCTTCCAGATGAAACTCTTCTCGCACTGTTGGCAATTGTAAGGCATTTTCCCTGAGTGAAAGTTCATATGCTCTGTAAGGTTTTGTTTCCAagcgaaactctttccacactgttgacAATTGTAAGGCTTTTCCCTAGTGTGAACCCTCATATGGTGTGTAAGGTTTTGTTTGcaagtgaaactctttccacagtcTTGACAAGTGTACAGATTTTCTCCAGTGTGAAACTGCATATGTTTTTTAAGGCTTTGTTTCcaaACATCCCTCATCCTGATCCCCCTCTTCCTTTTCATTCTGATCTTGACCCTCCTCTTTGAGTGGCATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019099 lncRNA downstream 85354 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019098 lncRNA downstream 179688 622709 ~ 633408 (-) True XLOC_008885
TCONS_00017553 lncRNA downstream 211737 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017552 lncRNA downstream 217833 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019096 lncRNA downstream 376566 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019101 lncRNA upstream 3172 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019102 lncRNA upstream 21996 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019103 lncRNA upstream 54942 869961 ~ 909037 (-) True XLOC_008896
TCONS_00019104 lncRNA upstream 60309 875328 ~ 875985 (-) True XLOC_008897
TCONS_00019105 lncRNA upstream 62185 877204 ~ 908307 (-) True XLOC_008898
TCONS_00017579 mRNA downstream 32597 765760 ~ 780499 (-) False XLOC_008890
TCONS_00017569 mRNA downstream 32624 722475 ~ 780472 (-) False XLOC_008890
TCONS_00017576 mRNA downstream 47081 749230 ~ 766015 (-) False XLOC_008890
TCONS_00017568 mRNA downstream 50774 722475 ~ 762322 (-) False XLOC_008890
TCONS_00017578 mRNA downstream 50777 758188 ~ 762319 (-) False XLOC_008890
TCONS_00017580 mRNA upstream 98779 913798 ~ 917274 (-) False XLOC_008890
TCONS_00017581 mRNA upstream 105279 920298 ~ 923981 (-) True XLOC_008900
TCONS_00017582 mRNA upstream 110181 925200 ~ 931848 (-) False XLOC_008890
TCONS_00017583 mRNA upstream 111506 926525 ~ 931815 (-) False XLOC_008890
TCONS_00017584 mRNA upstream 111509 926528 ~ 931815 (-) False XLOC_008890
TCONS_00017537 other downstream 387340 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 463529 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 506771 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1019952 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1450950 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1810009 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1921364 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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