RNA id: TU348577


Basic Information

Item Value
RNA id TU348577
length 394
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G306780
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4764299 ~ 4766102 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCCCCTGCTGTACCGAACCCTCATGTTTGTGTTTGCATGACTGCAGTGAGCTGCTACTCACCTGCTTTCTTGATTCTCTTTCGCTCTTTGACCTGGTAGGGTTTGTGGTCATGTGACAGCGGGATGGCATTACCGTCTTTATCACACAGCACTGCCCTCGAATCGCCAACATTAGCTACAGTTAAGTCCTTCTCAGACAGCAGAGCCACCAGACACGTGGTACCTGCTTCATCATAGGAGGCCGACAGTTTCTCCAGGATCTCTTTGTCTATGTTGAGTATCTGCTGCTTGAGGATGGACTTATGAGTAAGAGCGCTGTTTTCTTTCTGCTTCTCATAGCGCTGGAGCTGCTGCCGCAACATGATGGGAAGATGAGACTTGGCATACTCTGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU348548 lncRNA downstream 19665 4743846 ~ 4744634 (-) True G306752
TU348581 lncRNA downstream 42477 4721585 ~ 4721822 (-) True G306782
TU348573 lncRNA downstream 52161 4711839 ~ 4712138 (-) True G306777
TU348572 lncRNA downstream 53715 4710365 ~ 4710584 (-) True G306776
TU348560 lncRNA downstream 74244 4689797 ~ 4690055 (-) True G306764
TU348689 lncRNA upstream 194456 4960558 ~ 4960838 (-) True G306878
TU348720 lncRNA upstream 392035 5158137 ~ 5158842 (-) True G306905
CI01000092_04730022_04742422.mRNA mRNA downstream 21410 4729890 ~ 4742889 (-) True CI01000092_04730022_04742422
CI01000092_04692404_04694159.mRNA mRNA downstream 68823 4691840 ~ 4695476 (-) True CI01000092_04692404_04694159
CI01000092_04612376_04613032.mRNA mRNA downstream 151108 4612173 ~ 4613191 (-) True CI01000092_04612376_04613032
CI01000092_04545522_04550438.mRNA mRNA downstream 213560 4545236 ~ 4550739 (-) True CI01000092_04545522_04550438
CI01000092_04484800_04489910.mRNA mRNA downstream 273151 4484233 ~ 4491148 (-) True CI01000092_04484800_04489910
CI01000092_04822399_04827194.mRNA mRNA upstream 55804 4821906 ~ 4827194 (-) True CI01000092_04822399_04827194
CI01000092_04838658_04840626.mRNA mRNA upstream 72106 4838208 ~ 4840626 (-) True CI01000092_04838658_04840626
CI01000092_04873079_04899153.mRNA mRNA upstream 106749 4872851 ~ 4899153 (-) True CI01000092_04873079_04899153
CI01000092_04997617_05000398.mRNA mRNA upstream 231230 4997332 ~ 5000672 (-) True CI01000092_04997617_05000398
CI01000092_05003845_05017069.mRNA mRNA upstream 237702 5003804 ~ 5017408 (-) True CI01000092_05003845_05017069
TU348466 other downstream 258346 4496414 ~ 4505953 (-) True G306679
TU347691 other downstream 1084811 3677874 ~ 3679488 (-) True G306014
TU347441 other downstream 2039355 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 3532007 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 3667381 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU348596 other upstream 38293 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 387566 5153668 ~ 5154133 (-) True G306902

Expression Profile