RNA id: TU349703


Basic Information

Item Value
RNA id TU349703
length 210
RNA type TUCP
GC content 0.47
exon number 2
gene id G307751
representative True

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 1073022 ~ 1073753 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCTGGTGTATAGTGAGTTTTCTCAAAGCTCTGTCTATCAGTCTAGACGACACATTAAAGTTGCAGGAAAATAAGAACTGGCAGGATGGCTTTCTATCAACAACAGCCATTTTATAACCCGAGAGTCCCATTCAGTGGTCCAATCCAAGGAGGCTTGCAGGACGGGAAGAGTATTATCTTAAGTGGACGGGTTTTACCAGGGGCTAACAGATTTCATGTGAACCTTCAGTGTGGTTCTCATTCCGATGCTGATGTTGCTCTGCACTTTAACCCTCGCTGGGAGAGCACTGGGTATGTAGTGAACAACACCTACCAGAACAGGAACTGGGGCTCAGAGGAACGCAAGTATGAATCTCCCTTCCCTCAAGGCCAAACATTCACCCTCCAGATCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU349448 lncRNA downstream 4598 990661 ~ 1063421 (-) True G307536
TU349690 lncRNA downstream 169652 897958 ~ 898367 (-) True G307738
TU349469 lncRNA downstream 214167 780328 ~ 853852 (-) True G307550
TU349473 lncRNA downstream 233357 823658 ~ 834662 (-) True G307554
TU349502 lncRNA downstream 244961 820408 ~ 823058 (-) True CI01000093_00777884_00821939
TU349709 lncRNA upstream 55125 1128878 ~ 1129105 (-) True G307757
TU349506 lncRNA upstream 111157 1184910 ~ 1192058 (-) True G307587
TU349482 lncRNA upstream 130622 1204375 ~ 1204759 (-) True G307563
TU349733 lncRNA upstream 160330 1234083 ~ 1234697 (-) True CI01000093_01231795_01232733
TU349765 lncRNA upstream 205241 1278994 ~ 1279260 (-) True G307804
CI01000093_01024056_01030224.mRNA mRNA downstream 37681 1022996 ~ 1030338 (-) True CI01000093_01024056_01030224
CI01000093_00929066_00991259.mRNA mRNA downstream 76760 929066 ~ 991259 (-) True CI01000093_00929066_00991259
CI01000093_00906831_00917953.mRNA mRNA downstream 149289 906486 ~ 918730 (-) True CI01000093_00906831_00917953
CI01000093_00885214_00889462.mRNA mRNA downstream 178445 884976 ~ 889574 (-) True CI01000093_00885214_00889462
CI01000093_00841300_00846650.mRNA mRNA downstream 220892 840913 ~ 847127 (-) False CI01000093_00841300_00846650
CI01000093_01082814_01125194.mRNA mRNA upstream 7785 1081538 ~ 1125536 (-) True CI01000093_01082814_01125194
CI01000093_01136960_01147480.mRNA mRNA upstream 63207 1136960 ~ 1147480 (-) True CI01000093_01136960_01147480
CI01000093_01155146_01166220.mRNA mRNA upstream 81025 1154778 ~ 1166220 (-) True CI01000093_01155146_01166220
CI01000093_01189004_01193556.mRNA mRNA upstream 114794 1188547 ~ 1193673 (-) True CI01000093_01189004_01193556
CI01000093_01208954_01210829.mRNA mRNA upstream 135184 1208937 ~ 1210829 (-) True CI01000093_01208954_01210829

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018353 True 2201 mRNA 0.38 10 NC_007126.7 31032255 ~ 31043183 (-)