RNA id: TU362300


Basic Information

Item Value
RNA id TU362300
length 535
lncRNA type intronic
GC content 0.36
exon number 2
gene id G318557
representative True

Chromosome Information

Item Value
chromosome id CI01000106
NCBI id null
chromosome length 3151683
location 238999 ~ 239586 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGGCTCGATTTCGTTGTGTTGTGGCTTTTTTCTGTTGCGTTGTGGCTCGATTTCGTTGTGTTGTGAACTTATGTTTGCTTTTTTAATATTGTTGTGTTGTGCACTACTGGGCCACTGTAATTAGTACACCCAAAAATGAAAAAAAAAAAAATAAATGTCATCAATTACTCATCCTCATGTCGTTCCAAAGCTGCAAGAATTTCGTTCATCTTCGAAACACAATTTTTGATGTAATTCTACCACTTTTTCCAAGTTCATAAAGAAATCTTAAAACTAATCTATATGAATCGAGCAGTTTAGTCCAAATTTTCTAAAGAGACACGGTCGTTTTATACAGTATGATGAACAGATTAAATTTCGGCTTTTATTCACATATAATCAACCTCACTGGTTCTAACAGAAGCTCAAACGTGTTGCGTAATACACAAGAAGTAACCTCATTGGTTTTTGCAGAAGTTCAAATGTGCTGCGTAACACAAGAATGAACCTCATTGGTTCTTGCGGAAGCTCAAACGTGTTGTGTAACACACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU362278 lncRNA downstream 47855 137530 ~ 191144 (-) False G318538
TU362277 lncRNA downstream 47855 164012 ~ 191144 (-) True G318538
TU362279 lncRNA downstream 76143 137530 ~ 162856 (-) False G318538
TU362280 lncRNA downstream 99822 132837 ~ 139177 (-) False G318538
TU362288 lncRNA downstream 110259 114838 ~ 128740 (-) True G318545
TU362336 lncRNA upstream 138441 378027 ~ 381236 (-) True G318589
TU362369 lncRNA upstream 307018 546604 ~ 546892 (-) True G318610
TU362370 lncRNA upstream 307696 547282 ~ 547548 (-) True G318611
TU362371 lncRNA upstream 308003 547589 ~ 547798 (-) True G318612
TU362373 lncRNA upstream 314867 554453 ~ 554748 (-) True G318614
CI01000106_00249711_00261211.mRNA mRNA upstream 9945 249531 ~ 261607 (-) True CI01000106_00249711_00261211
CI01000106_00301563_00318741.mRNA mRNA upstream 61878 301464 ~ 319267 (-) True CI01000106_00301563_00318741
CI01000106_00404235_00474818.mRNA mRNA upstream 164649 404235 ~ 474818 (-) False CI01000106_00404235_00474818
CI01000106_00512101_00521608.mRNA mRNA upstream 272305 511891 ~ 521834 (-) True CI01000106_00512101_00521608
CI01000106_00524817_00538057.mRNA mRNA upstream 284650 524236 ~ 538094 (-) False CI01000106_00524817_00538057
TU362275 other downstream 133315 103901 ~ 105684 (-) True G318537
TU362282 other upstream 235002 535495 ~ 535553 (-) True G318540
TU362269 other upstream 297516 537102 ~ 537431 (-) False G318535
TU362270 other upstream 297580 537166 ~ 538956 (-) False G318535
TU362271 other upstream 297580 537166 ~ 537431 (-) False G318535
TU362272 other upstream 297580 537166 ~ 537431 (-) True G318535

Expression Profile