RNA id: TU373185


Basic Information

Item Value
RNA id TU373185
length 1593
RNA type TUCP
GC content 0.41
exon number 2
gene id G328332
representative False

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 780164 ~ 781784 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAACACATGGCACAAATATATTTAACTTTTGATTTATTCAGACCATTTGTCCCATTATGAGGCAAGTCAATGTTTTGTGTATTCTTTAAAACATGTACTTTACATTGCCCACCAGTGGCATTACATAAAATTTGCTCACATAAAATAAATAACATTCTGTGTTGCTTTAGACAGCACACACACCTTGTTTACTAATTTGGTGGACAATTCCAGTTAGAAAGAAAGGATAAAAAAAGAAAGAAAAAGAAAAACAGAAAGATGACCAAACTCATTAATAAATGGTTCTGTCCCATCAATGTCAGTAATACTGCTATTAAAGGTTATTTGACAGGCTCTTCAAATGGGTTATTTATTTGTTAACTCAAACTATGTCTATGGGCTGTAGAGAAATGGGCCATCAGCTCTTTTCCCATCGACCATCTACAAAACAATATTGCAAAAACCTAATTAGACGACCTAGAATGATGTTATGCTCTAGGGGCGCGTGCAATTACTCCAAACAGAATTCCTCGTCACGAGGGAGACCGCTAATGGTGCACACAGATGCCAGTCAAAGGGGATGAATACCCGACAAAAATGTGTGGGGAATTTCGAGGAGGCGTGAATGCATGTGTAGCCACAAAAAAAAAAAAGGCCATTTATAAGGCAAAATGCAGTCAATTAGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTACCTCGGCTTGATGGAAAACACTATGTAGGCATACCGCAGGTTTAGGGCATTTAGAGAGTACGTCTAAACGCGAAAACTGTCAGCCAAACCAGACAAAATGTATAACAGTACAATATTGAAACAGCGGCACGTTTGTTGATGTTAAATGATTCCACAAGGATTACAAGGTGTCTCGAAGGATCACATTTTTTGGCCACGTCTATATGTAAACATCCTTTAATGGCTGTGTGCTGACAGTGGCACTGGTGTACCGCGCAATTAAATTCAGTCATATATCATGGCGCGCCTGCGCACGAGTTCTCTCCCGCTCTTGTGTGCTCCCCCCATCTGTCACTGCGAGAGAAAGTGAAAAAGAATGAGTACGAGCGCAGCGGTAGTGGAAGCGTCTTTCCCGCCTCCTCCTCTTTTCGGTCGGAGCGTCAAGCCAAGACTGCTTCTATGTCTCACCTGTTTTGGAAAGCGACGAGAAGTCTCGGGTCCAGAATATTTTCCTCTGGCTCCCACGTGTTATATCTGTAGAGAGAAGAAAGGAGGCGGAGAGCGAGGGAAGAGGGAGAGAGCAGAGAAGCATGAATGTCACCAGCTCTCTCAACCTAACTATCTAACGTGGCTGTCATCTGAACGACTAACAGGAGGCACTAACGTCCTACTGATCGGATCTTCAAAAATGTTAGGGAGTAAAAAATACTGATGCATGTACTGTTAACTGTTCGGTACTGTTAGTAGCCTATAATATTGTTTTAAAATATTCGTTAATTTAACAAAACAGAACCCCGTTTCTAATGCATTAAGGTTAAATATGAAACATTATTATTTACCATAAAAAACAAGTTATGACAATCCCGCATCAGTTAGCAAGCGCAATTAGCCTCTCTCTCTCTCTCTCTCTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373176 lncRNA downstream 10795 769042 ~ 769369 (-) True G328326
TU373070 lncRNA downstream 76190 703420 ~ 703974 (-) True G328228
TU373065 lncRNA downstream 82292 697769 ~ 697872 (-) True G328223
TU373147 lncRNA downstream 90960 688873 ~ 689204 (-) True G328300
TU373145 lncRNA downstream 100676 679232 ~ 679488 (-) True G328298
TU373234 lncRNA upstream 106348 888132 ~ 891814 (-) True G328373
TU373209 lncRNA upstream 124606 906390 ~ 908279 (-) True G328348
TU373236 lncRNA upstream 126633 908417 ~ 908684 (-) True G328375
TU373212 lncRNA upstream 127271 909055 ~ 911789 (-) True G328351
TU373210 lncRNA upstream 130629 912413 ~ 913418 (-) True G328349
CI01000112_00696611_00697182.mRNA mRNA downstream 82736 696556 ~ 697428 (-) False CI01000112_00696611_00697182
CI01000112_00311207_00314623.mRNA mRNA downstream 465280 309692 ~ 314884 (-) True CI01000112_00311207_00314623
CI01000112_00296142_00298776.mRNA mRNA downstream 481316 295158 ~ 298848 (-) True CI01000112_00296142_00298776
CI01000112_00133946_00189136.mRNA mRNA downstream 591028 133946 ~ 189136 (-) True CI01000112_00133946_00189136
CI01000112_00792970_00793455.mRNA mRNA upstream 10548 792332 ~ 793455 (-) False CI01000112_00792970_00793455
CI01000112_00810157_00821637.mRNA mRNA upstream 27677 809461 ~ 821932 (-) False CI01000112_00810157_00821637
CI01000112_00844872_00849049.mRNA mRNA upstream 62825 844609 ~ 849063 (-) True CI01000112_00844872_00849049
CI01000112_00924047_00930234.mRNA mRNA upstream 142051 923835 ~ 930256 (-) True CI01000112_00924047_00930234
CI01000112_00962490_00964721.mRNA mRNA upstream 179953 961737 ~ 964721 (-) True CI01000112_00962490_00964721
TU373157 other upstream 10487 794847 ~ 794946 (-) True G328309
TU373156 other upstream 26761 868518 ~ 868636 (-) True G328308
TU373528 other upstream 504308 1286092 ~ 1286524 (-) True G328641
TU373529 other upstream 504871 1286655 ~ 1286958 (-) True G328642
TU374646 other upstream 847992 1629776 ~ 1633322 (-) True G329587

Expression Profile