RNA id: TCONS_00017883


Basic Information

Item Value
RNA id TCONS_00017883
length 2964
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_009077
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14674928 ~ 14755318 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacacacacacacacacatcaatgctGATGGCTCATCGTGGGCTGTGCGGGTTTTTTCATGTCCTGGTGAGCACCAAGGAAGAAAGAAAAGCTGTGGAATAATACAGTCTGCCCTTTACTATGTGAGATCTTTTTTTATAATCTTCCTTGTTAAGATGTGTTCATGCTTTAccctttttatagttttatacttACTTAATATGCCGGACGAATCATTCGGCGAGATGTTCACTTCGATGTTGAGCGTGAATCAGGCTGTTTCTGCAGAAAGAAAACTCATCGATCACTTAATAATATACATTGAACACGAGGCACAAAGACTGGAAGATATTAAACGGTTCTTTTCGAGAGTCACATCATTGCATGATGGGATATACAACGAGCCATCAGATCCCATAGCCAATCCAATTGCTGCATTTAAACTGGTCAAAAGACTTAAATCCGAATGGTTGAATGTTGTCCATAGCACTGAAGCTGAAGAAAACATTAAAGtCCTTAGGGAGGACTACAGGAGGATGGAAAGCAGTTTGCCCAAACTGGAGGACCTTCGGGGGGCAGCGCATGGGCTGATGAGACTTCAGGATGTGTACAATCTGCACGTAGAGAGCCTTGTGCGAGGTCACTTCCAGCAAATATCTGATCCTGTTGACTTTTACAAACTCTCTGTGTCCGATATGCTCTCCGGGGATGATTGCTTTCTTGTTGGAAAGGTGGCCTATGATTTGGAAGATTACTACCATTCTGTGCTGTGGTTTGAGGAGGCCGTTCGACTCTTCCGAGGAACCGAATGGAGTCCAGAAAATGAAGGCACGCTTGAAGATGCCCTGGACCATTTGGCTTTCTCTCATTTCAAGacagGAAACATATCCCACGCCCTCAGTCTCTCCCGGGAACTATTGCTTCATGatCCCATGAACAGAAGGGTACACTTCAATGTGGAGAAGTACGAGAAACTCCTAAATGAAAATCTACCTGCTACTAGCAGTGGTTTGACTTTGAAAAGGCCCGACGGCATTTATTTGAGAACCAGGAATGCCTATGAACAGCTCTGCCAAACCAAAGGATCTCAGcCAAAGCATTTTGAGAATCCCAGTTTGTTCTGTGACTATTTCACCAACGGCAGCCCTGCTCTATTTCTGCAGCCAATCAGACGAGAGATAATCAGCCTGCAGCCCTATGTGGTGCTCTTCCATGGCTTCGTCACCCAAGCTGAAGCCAAAAACATCAGAAAATATGCAATGCCAGGGCTCAGAAGATCAGTGGTGGCATCAGGCATGAATCAGGCCACTGCTGAATATCGCATCAGCAAGAGCGCATGGCTGAAAGAGTCGGCCCACGAGGTTGTGGGTAAGCTGGATCAACGCATCACCTTGGTAACTGGACTGAATGTGCAGCCTCCTTATGCCGAATATCTCCAGGTTGTAAATTATGGGATTGGAGGACACTATGAACCTCATTTCGATCATGCCACAtccgACTCTAGTCCATTGTACAGACTAAAAACTGGAAATCGAGTGGCTACAATCATGATATATctgAGCCCTGTGCAAGCTGGAGGATCCACAGCCTTTATCTACGCCAACTTCAGTGTTCCTGTTGTGCAGAATGCTGCTCTCTTCTGGTGGAACCTGCATAAAAATGGCCAAGGAAATGTTGATACTCTTCATGCTGGCTGTCCTGTTATTGTTGGCAATAAATGGgTTGCCAATAAGTGGGTTCATGAGTATGAACAAGAGTTCAGACGTCGATGTAGCCTTAATCCCGAGGAGTGAAAGAAGCAAGAGCCCTCAATGGTTAACATTCATCAATGACGAACATTTGCAAGTGAGGGAACAAAAAGCTGAAAACCACAGACATTATCAACAACCACATGCCTTCAAGTGAACTGCGACGGCAGCATTGTGAAGAGAGGATGATTCTCATGGATGTCTGATGGGCGCAGTTTGTGTTAAGAGAGTGGGTTGGAATGCAGCCTACAGCCTTAAGGTCAGACTGACCTCTTGTTCCTGCTTATGAAGATGAACACCAGATTGTTTGATgaaaatcaaatttaaatatgtttacaagAGTAATGAATAAAAATTAGCAATCTTGTTGTGTTCTGACAGCaaacaatgtttttctttttttattacttcACAATAGGGATAAATATCAATCAACATTTAGATGTTTGTTAGCTTTGATATACTGCATGTGTTTAAATCTCAGTGGTAATTTTGGAGGAACCCGTGTGCCTCAAAATTGTGGACTCTGCAGATGCTGCACTTTTTTTATTCCAAGAACTGACCACAAATTAGGAAACCAGGGAGCTCAAAGAAGCAGGCTGGctcatttcacaaaaaaaaaaaaaaaaaaaacaccacacgACTGCTACATCTTTGACTCCAAACGGATCTGCCTCTTGAAATCATGTGCGACTTCATAGTGTTGGTCCTGAAATAGCACAGAAGAGAAGTCTTTGCAACCACATTGGACTTGGAAACTTCAAAGTCATTCAACCTTTAAGTTGGAGTTCCATCAAGATCATGgctttttcatttttgttaaccCTATAATGCTTTTGAGGCTTCTTATTTTCAGTCTATTCATTTCACTCCACAACTCTTTTCAGAAATGGTTATATGCTTTGTATAGAATTGGCAATGTTAGGAAAATAACCATCAAGAGGAACTGTTTGACTTGCTTAATTCCCTGAAATCCCTTGATCTAATAAAGATCAGGTCAGAAAGAAGTTTTTATTTTCTCCCCGAGGTCTTCGTATTGCTGACTGATTTGTTCTTTTaaggtacagttcacccaaaaatcatttACTTATCCcaaacttgttccaaacctgtttgtctgtTCTTTAACTGGTAATCTTTGaattccatagtagaaaaaccaAATCTATGGTTTTCAATATTCTttagtatacagttaaagtcagaattattagccccccctaaattattagccccc

Function

GO:

id name namespace
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-4 Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including alar plate midbrain region; muscle; optic tectum; retina; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDART00000166880

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017870 lncRNA downstream 426881 14246090 ~ 14248047 (-) True XLOC_009069
TCONS_00019132 lncRNA downstream 442858 14229248 ~ 14232070 (-) True XLOC_009068
TCONS_00019131 lncRNA downstream 610578 14062613 ~ 14064350 (-) True XLOC_009063
TCONS_00017856 lncRNA downstream 610626 14062613 ~ 14064302 (-) False XLOC_009063
TCONS_00019130 lncRNA downstream 1466516 13206623 ~ 13208412 (-) True XLOC_009060
TCONS_00017888 lncRNA upstream 128055 14883291 ~ 14884061 (-) True XLOC_009080
TCONS_00019133 lncRNA upstream 272976 15028212 ~ 15030391 (-) True XLOC_009081
TCONS_00017892 lncRNA upstream 469095 15224331 ~ 15227050 (-) True XLOC_009082
TCONS_00018816 lncRNA upstream 548491 15303727 ~ 15307733 (-) False XLOC_009083
TCONS_00018817 lncRNA upstream 548491 15303727 ~ 15307751 (-) False XLOC_009083
TCONS_00017881 mRNA downstream 32742 14630690 ~ 14642186 (-) True XLOC_009075
TCONS_00017880 mRNA downstream 49555 14602520 ~ 14625373 (-) True XLOC_009074
TCONS_00017879 mRNA downstream 85251 14554298 ~ 14589677 (-) True XLOC_009073
TCONS_00017878 mRNA downstream 188394 14436613 ~ 14486534 (-) True XLOC_009072
TCONS_00017877 mRNA downstream 205224 14436613 ~ 14469704 (-) False XLOC_009072
TCONS_00017886 mRNA upstream 21618 14776854 ~ 14780602 (-) True XLOC_009078
TCONS_00017887 mRNA upstream 120490 14875726 ~ 14884332 (-) True XLOC_009079
TCONS_00017889 mRNA upstream 465887 15221123 ~ 15230264 (-) False XLOC_009082
TCONS_00017890 mRNA upstream 466185 15221421 ~ 15227541 (-) False XLOC_009082
TCONS_00017894 mRNA upstream 593254 15348490 ~ 15357178 (-) True XLOC_009084
TCONS_00017882 other downstream 39143 14635669 ~ 14635785 (-) True XLOC_009076
TCONS_00017874 other downstream 359458 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017866 other downstream 481032 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017858 other downstream 591815 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017854 other downstream 850324 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017891 other upstream 466247 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017896 other upstream 628662 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017917 other upstream 1204140 15959376 ~ 15960468 (-) True XLOC_009094
TCONS_00017936 other upstream 2038875 16794111 ~ 16872600 (-) True XLOC_009108
TCONS_00017944 other upstream 2306341 17061577 ~ 17071246 (-) False XLOC_009112

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000154_01491928_01502154.mRNA True 1738 mRNA 0.44 13 CI01000154 1491928 ~ 1502353 (+)