XLOC_009112 (lgals17)


Basic Information

Item Value
gene id XLOC_009112
gene name lgals17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17059622 ~ 17074393 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017943
TATAATGCTAGCTAAGTTTCGTTTTTGAGAAATGAAGAGAGACCGTGAAGCTATATAACCCGCTTCTGAGCTGTTTGCAGTCACACTCATGCAGCAACAGGAGCCGGCACAAATGCAAGATGGACAGAGTGAACAGGTATTCAGCTTTTCTGATGCTAAGGCTCCTCATTTGTGTCGGCTCCTCTCCGCTCTCAGTGCTGTTCTATACCTCCTCGAAGGTGGGCCTGCCAGCGGTTCTGCCCTGCACAGTGGAGTCACATCTGGAGTCTGAACGGGCTCCTCATATTCAGTGGCAGACCGTGAGCGACTCTGTGTTTGAGCGAATGGGACAGGAGCAGTTCCAGGGGGAGGCTTACATAAACCGAGCGGACGTCCCAGAACATATGCTCGTCAAGGGAAACTGCTCTCTCTTCTTGCAAGATGTCAGATTCAGCGATGCGGGCGTTTACGAGAGTTACCTGGTGGTTGGGGAACCAAGTAAGCCTGTCAAGAGCCGGATTTTCCTTCAGAGCGTCCAACTTGTGGTTGTCGATCACAAGGCCATCAGGTCTGTTCAGTTGGGCTCAGATCTGATCCTGGATTTACACACACATCAAGCCGAGCAGGTGATTTTCCAGAGCAGTGATGACACAGACTGGACAGTCCtgtgggagagagagggagacgtGAAAAAGAACGGTCATCTGAAAGAGAAAGACAACAAACTGATCCTCAGAAGGCTTTCGGCCAGCAGCGCCGGAACATACAAAGTTTTGGATTCACAGGGTTTGGCGCTCAGCACAGTCAAAGTCACAATAACAGAACCTGTGCTACCAAAAGAATCAGAGGTTTTGCAAATACAGTCAGCATACGGTAAAGCTACAACGATTGTGCCTCCTCTAAGCCTCATTACTTTTTTCCTTGTGTTTGAAATCTTGTGTTTTTCCACTGGTTgaaattaacagatattttgttttaattgtattttaataacattctGTAATATTTTAGCCCTGTGTGAAATTTCTGTCTTTGAAATGAATGGGTGTTCTTTGCCATTTCTTTCATAGTGGATAATTTACTGCACTCTGAAatgttcaaattatttaaaataaatcattattatataCAACAGAAACACATGGATCAAATAAGTACAAA
>TCONS_00017944
ACACTCATGCAGCAACAGGAGCCGGCACAAATGCAAGATGGACAGAGTGAACAGAGAGTGTGTGCGTAAGCAGATGCCGCAGATGATTCGGGAATATGAAACTGAGAGGAGCCAGCCAGCTTCTTACTACGTACAAACACGTAGATAGATGAAGATGAAGACGAAGCCGAAGGCAGGATGCAGACCAATGCAGATTGTATTCAGCTTTTCTGATGCTAAGGCTCCTCATTTGTGTCGGCTCCTCTCCGCTCTCAGTGCTGTTCTATACCTCCTCGAAGGTGGGCCTGCCAGCGGTTCTGCCCTGCACAGTGGAGTCACATCTGGAGTCTGAACGGGCTCCTCATATTCAGTGGCAGACCGTGAGCGACTCTGTGTTTGAGCGAATGGGACAGGAGCAGTTCCAGGGGGAGGCTTACATAAACCGAGCGGACGTCCCAGAACATATGCTCGTCAAGGGAAACTGCTCTCTCTTCTTGCAAGATGTCAGATTCAGCGATGCGGGCGTTTACGAGAGTTACCTGGTGGTTGGGGAACCAAGTAAGCCTGTCAAGAGCCGGATTTTCCTTCAGAGCGTCCAACTTGTGGTTGTCGATCACAAGGCCATCAGGTCTGTTCAGTTGGGCTCAGATCTGATCCTGGATTTACACACACATCAAGCCGAGCAGGTGATTTTCCAGAGCAGTGATGACACAGACTGGACAGTCCtgtgggagagagagggagacgtGAAAAAGAACGGTCATCTGAAAGAGAAAGACAACAAACTGATCCTCAGAAGGCTTTCGGCCAGCAGCGCCGGAACATACAAAGTTTTGGATTCACAGGGTTTGGCGCTCAGCACAGTCAAAGTC
>TCONS_00017945
CTTGTTTTCTTCTTTAAAACAGAAGCGAAGCACGCATTTACTCTCGTGGACGCGTAGACTGTACTGAAACTGTTCGTTGACACGTTTAACCGACGGCTACATCCTGTCATTTCGGTTATTCTTACCTCTCCGTTGCTTACGGAGGACTGCTGTGTTGCTTGAGTCTCCTGCGCCGCCATCTTACCTGTCTCTATCGCACACTGTAATGTGCTGGTATTCAGCTTTTCTGATGCTAAGGCTCCTCATTTGTGTCGGCTCCTCTCCGCTCTCAGTGCTGTTCTATACCTCCTCGAAGGTGGGCCTGCCAGCGGTTCTGCCCTGCACAGTGGAGTCACATCTGGAGTCTGAACGGGCTCCTCATATTCAGTGGCAGACCGTGAGCGACTCTGTGTTTGAGCGAATGGGACAGGAGCAGTTCCAGGGGGAGGCTTACATAAACCGAGCGGACGTCCCAGAACATATGCTCGTCAAGGGAAACTGCTCTCTCTTCTTGCAAGATGTCAGATTCAGCGATGCGGGCGTTTACGAGAGTTACCTGGTGGTTGGGGAACCAAGTAAGCCTGTCAAGAGCCGGATTTTCCTTCAGAGCGTCCAACTTGTGGTTGTCG

Function

symbol description
lgals17 Predicted to be involved in several processes, including cell surface receptor signaling pathway; cellular response to lipopolysaccharide; and regulation of T cell activation. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0042102 positive regulation of T cell proliferation biological_process
GO:0042130 negative regulation of T cell proliferation biological_process
GO:0006955 immune response biological_process
GO:0031295 T cell costimulation biological_process
GO:0071222 cellular response to lipopolysaccharide biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0009986 cell surface cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-418 Predicted to be involved in several processes, including cell surface receptor signaling pathway; cellular response to lipopolysaccharide; and regulation of T cell activation. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000088251

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017943 False 1140 mRNA 0.45 6 17059622 17071328
TCONS_00017944 False 851 nonsense_mediated_decay 0.51 5 17061577 17071246
TCONS_00017945 True 608 mRNA 0.52 3 17063008 17074393

Neighbor

gene id symbol gene type direction distance location
XLOC_009111 hip1 coding downstream 34410 16935390 ~ 17025212 (-)
XLOC_009110 BX571762.1 coding downstream 151492 16900902 ~ 16908130 (-)
XLOC_009109 TMEM120A coding downstream 174710 16873690 ~ 16884912 (-)
XLOC_009108 tyw1 coding downstream 187022 16739160 ~ 16872600 (-)
XLOC_009106 caln1 coding downstream 355205 16564692 ~ 16704417 (-)
XLOC_009113 mos coding upstream 23958 17098351 ~ 17099560 (-)
XLOC_009114 NA coding upstream 48019 17122412 ~ 17125772 (-)
XLOC_009115 mrpl28 coding upstream 53889 17128282 ~ 17138640 (-)
XLOC_009116 cul5a coding upstream 72609 17147002 ~ 17169935 (-)
XLOC_009117 itgae.2 coding upstream 103242 17177635 ~ 17190540 (-)
XLOC_009107 BX649487.1 non-coding downstream 361706 16697515 ~ 16697916 (-)
XLOC_009105 NA non-coding downstream 504449 16554382 ~ 16555173 (-)
XLOC_009093 NA non-coding downstream 1348449 15708065 ~ 15711173 (-)
XLOC_009092 NA non-coding downstream 1384470 15669244 ~ 15675152 (-)
XLOC_009119 CU861501.1 non-coding upstream 139669 17214062 ~ 17220226 (-)
XLOC_009120 NA non-coding upstream 160472 17234865 ~ 17252051 (-)
XLOC_009121 NA non-coding upstream 205160 17279553 ~ 17285143 (-)
XLOC_009122 CR848791.2 non-coding upstream 305119 17379512 ~ 17382582 (-)

Expression


Co-expression Network