XLOC_009115 (mrpl28)


Basic Information

Item Value
gene id XLOC_009115
gene name mrpl28
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17128282 ~ 17138640 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017947
AAACCTGTAGCTGCCTAGCGGCAGAGTGGTTCAATTCCACCTTTCGGGCGACCTTGAGTCTCATCactacaaaaatatttaagaaattacaCAAAACAGACGATACTGAAAATAATAAACGTTACTTATAAAATACTTTGCGTCATGTGCCGCTTTATAATTTTCATAAACCCGGAAGCGCAGCCACGCGAACAACCCAATCAGCGCATTAAACACTCAACTGGACCAATCACAGCGCTCACTGAAGTGTCTGTCATAGGAAATGACGTACAGTGCCCTTGGTTAGCTTCATGCATGCTGGATTGAGAGGCTAGCAGGCTAACATTTATCATGTAAAACAATTTATAACATTTCCCGATCGCGTCAATCCCCGGGTTTGTCTCACACGATGCCTCTACACAAGTATCCCCCAAAGATCTGGGAAGCCCTGAAGCTGCAGAAAGGCATCTACGCGCGTCTGCCGCAGCATTACCTGCGCTCTCTGCAGGACACCTCTCCTCCCACCACTGTGCACTGGAAACCCCTGGGTGTCAAATACAGGATCAATCCTGATACGAGACAACGAGAGAGAGTCCAGGATGTGCCAATCCCCGTTTACTATCCTCCAGAGTCACAGGATGGACTCTGGGGTGGAGAAGGCTGGATATCTGGCTTCAGATATGCCAAAGACGACAAGCTTTCCACAAGACTGCCCAAAACCTGGAAGCCCCAGCTGTTTACAAGAGAGCTGTACAGCGAGATCCTCGACCAGAAGTTCAGTGTGACAGTCACTTCTCGAACACTGGACCTTATCGATGCCGCTTTTGGCTTCGACTTCTACATTCTGAAGACCCCAAAACAAGATTTGAACTCCAAATTCGGTATGAATCTAAAACGAGCGATGCTTCTACGGCTGGCACGCAAAGACACAGACCTGTACCCCGAGGATCAACAGCGCAGAGAGAAAATCTACAAGCGCTACAAGCAGTTTGAGGTGCCAGAGGAGGAGGCTGAATGGGTGGGCTTGAGTCTGGAGGAGGCAGTCGAGAAACAGAGACTACTGGAGAAAAAGGATCCAGAGCCGCTCTACAAGGGTCTGGTGAAGAGTCTCGTGCAGGAGCTCGCCCTTAAGAAGCTCTCAGAGCCACAGATTGTGGAGAAGAAATGAAACCATCTTCCCTGTTTGAAAGAGAAAcgtgtatttatttgtgttatcaTCACCAGAAGCTGTGTGCTTGTGTTCtgtaaatatatcatttttacTTAATAAACCGATTAAAAGA

Function

symbol description
mrpl28 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in lens; myotome; and solid lens vesicle. Orthologous to human MRPL28 (mitochondrial ribosomal protein L28).

GO:

id name namespace
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050522-113 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in lens; myotome; and solid lens vesicle. Orthologous to human MRPL28 (mitochondrial ribosomal protein L28).

Ensembl:

ensembl_id ENSDARG00000057805

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017947 True 1262 mRNA 0.47 6 17128282 17138640

Neighbor

gene id symbol gene type direction distance location
XLOC_009114 NA coding downstream 2510 17122412 ~ 17125772 (-)
XLOC_009113 mos coding downstream 28722 17098351 ~ 17099560 (-)
XLOC_009112 lgals17 coding downstream 53889 17059622 ~ 17074393 (-)
XLOC_009111 hip1 coding downstream 103070 16935390 ~ 17025212 (-)
XLOC_009110 BX571762.1 coding downstream 220152 16900902 ~ 16908130 (-)
XLOC_009116 cul5a coding upstream 8362 17147002 ~ 17169935 (-)
XLOC_009117 itgae.2 coding upstream 38995 17177635 ~ 17190540 (-)
XLOC_009118 itgae.1 coding upstream 57887 17196527 ~ 17213723 (-)
XLOC_009119 CU861501.1 coding upstream 75422 17214062 ~ 17220226 (-)
XLOC_009120 NA coding upstream 96225 17234865 ~ 17252051 (-)
XLOC_009107 BX649487.1 non-coding downstream 430366 16697515 ~ 16697916 (-)
XLOC_009105 NA non-coding downstream 573109 16554382 ~ 16555173 (-)
XLOC_009093 NA non-coding downstream 1417109 15708065 ~ 15711173 (-)
XLOC_009121 NA non-coding upstream 140913 17279553 ~ 17285143 (-)
XLOC_009122 CR848791.2 non-coding upstream 240872 17379512 ~ 17382582 (-)
XLOC_009125 NA non-coding upstream 612510 17751150 ~ 17754926 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_02103844_02105757 MRPL28 coding CI01000053 null 2103554 ~ 2105895 (+)
rainbow trout (Oncorhynchus mykiss) trnastop-uca-4 NA coding NC_048591.1 CM023245.2 6352323 ~ 6352409 (-)
eurasian perch (Perca fluviatilis) trnastop-uca NA coding NC_053113.1 CM020910.1 32442967 ~ 32443053 (+)
tiger barb (Puntius tetrazona) trnae-cuc_3 NA coding NC_056699.1 CM032068.1 20096955 ~ 20097026 (-)