XLOC_009114


Basic Information

Item Value
gene id XLOC_009114
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17122412 ~ 17125772 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019139
GGACCTTCTGCCAGGATAGTCAATGTTAAACCCTGTTAGTCTGAAATTGCAATATATTCAAATCAACAGAGAGACAGAGAAGAGAATCTCTTTACATTAATAGTGTTAAAAAGTCATGATGAGTAATGTGAATGGAAAATCACTTCTCACGATAGTCACAAGAAAAGTCATACGCTCTGACATTAGGTCATAATGAAagcttttaaaaacagaaaacctACAGCATCATCTATAAATAAAGTCCACTGAAAGACTTGGGGGCGAAATAGTGACGTGTTGAGTGTGTGGTTATAGATCTGAAAGCTTTATAAAGTATCAGAGAAGCACAGCAATAGTGAACGAGGAAGTGACTGCAATTCTTTTTATCTGATTGCCATAGTCAAATGCATGAAATCAAAGGTCTGATTTATTTTCAGTTAGAAGGACATTTTAGTCTAACCAAATTTAAGAGGATGGATTGTTGTGTTTGCACTGAAGTGTTTCATCCAAATGAGATCAATTGCCAATGTTTTGTTTGTAATGAGGTACATTTGTTTGGAGTTTAGAAACTTGAGACAGAAAGAAGTGACAGTTTATTCTAGTGCTAATAGCAAGTACACAGAGGAACAGTCAAATTATTTTTCCAAACACAATTATAATACAATAACACACTGAGAAGCAAAGCGACAATTTTTGCAAGCAAATGAAGACATTTTACACAGCACATCTACAGTGCGGGATATAAGTATTCAACATCTAAttattttctcagaaaacatatttctaaaggtgccgttgacttgaattTTTTTCCAGATGTCAGTAACAATCAAAGAAATCCATCTATGCAaagaaaactattttttattaatttacaaattatatatgtgtaataaaatgaaatgacacaggaaaaaagtattgaacacatgaagagagtgaaagcccagacagcagctgaaatctcttcaGTTCTTCAATCGCTCTGCTCTATCTCATTGTAatttaatatcagctgcttcagtccaacatctacattaccaagatgaaaccagagtggacactTCAGCACGACAAtggtccaaaacacagccaaggaaactctcaaatgctttcagaaaaagaaaatcaagctgtagaatggcccagccaatcacctgacttgaatccaattaaAAATAGCAATTAAAGATCAGATCAGATAGACGAGAcctacagaaccatcaagatttttacactctgttgaagtctgtgaaaaaagcacaccgagcaatgcatgtgacttcattctccatatgagtgATGTCTAAAAGCTGCCATTACCAAAAAAGcttttaatataaagtattaaataaatttcagtaGATCAATATTGTGTGTCATTTCATtgcaattaaacatatttttttcagattgttttgttacattgttatgtttgtattgtttgggtttttaccaaaatctggtttaattctgtcaacagctcctttagaatacTTTCCCAGGAAAATACATGACATGCTCAAAACTTATTTCCCCCCACTGTATatgtgaaaataaacaaaatgcttTCCATTGTTTAAGATTGTATATACAGCTTCCTTCAACTTCTACTTAGTTACTACACAGACCAAAGTATCCAAATGTTTGTGTCACTTTACTACATTCAGTTCAGTTTTACTAAAACATGACCAGGGTTTAGATTGAAGTAGTAATGTGGCGATTCCCAATGAAACTAAAACGCTCCCTAAGCCACCGACTTGACCAAAGTACCATACTGTGTCAGGAACCAGAGCACGTGACCTCCACTGCCTTTAGATGCTGAGAGAATGTTTTATAGCAATTGTTTATGGTTCATTTAATCTGTCATTTATATGATGTATTTTGAATAACATATGACATTTACATGACACtgaacaaaacaaactgtgattggTAGATTTAGATGTCAGTCAGGTTCTACATGTAAACCCAAAGCCTATGCAAAAGTGCTCACTGGAAAACCAGATATCATGATAATGCACTACATTTCCAGATAGGAAACGGCCACTGGCAGGTTTATTGTGTTTGTCTTTAtcatagttcaccaaaaactaCAAatttcctcattatttactcacccttaagggGGGTTCACTTCGGTTTctctattctgttgaacacaaaataatataagcagCTTAAAACCTGtgactttcatagtaagaaaagcaaatatcttcttttgtgttggacGAGTGTGAAAGAttaaagagtaaatgatgacaggaatttcagttttgggtgaactatctctttaaatgtcGTATTTTTCCTCTTTAATGCTGTTAATTGAAATTTCTCAGCTCTTCAGAAATGTTATATCACGATTCAAGTAACACACGTTAGTGAATTTGGATTGGGGACAAGCACAATACTACAAACCTAagctcagaaacacacacaataaattaGCAACAACCAAATAAAATTCACAACTGGCACATTACAAGCAGATAAGCAGTATCTGTTGCTCCCTTTACAAAACACATAGGCTACATGCTAGGCCTACCGTTTGCTAACGGTCATTAGCCTCAGTTACTTCATAAGTACTGAACATTTCTTACCAAATTGAAAGTCAAATAGTGGCAACCAAAACTCACTGGCAGTCAATTGCAGTGTTCTGACATTTAATCCTACTCTGTATTTGAAGGGCTCTAAGGTTAAGGTTAAGGACAGGGGTAGGCCAAGTCCTCATATCACTCCACATCAAACATTGACGCTGTTAGCACAAGCTGATTTATGGCATATTTCACCATCAAGATGTGCTACCTagtttttgaatgggaggtaggacaatctgacaaagTAGGACGAATTGACAGAACACCGcctcaaaaatatgtttaaaaagtcAGCAGCGACTGTTCATCTCAGCATTCAAAGGTCCGGGTTGTTCTCAGTCTTCACAGAGGAGAACATGAACTCTTCAATGTTCTCCAGATCTGCTGGATAAGGCTGATTCTCACTCACCATCTGACTGAAGTGTGCATCGTTTATGGATGCCATGTTTAACATTGTTTGGTTAACATTTATATCTGCGCCATCCAAAACAAGGTTTAATTCAGAACTGAGTTGGTTGTAGACCTGGTCAGAACCATGCGGACCCAAGCACTGGAGGAGGAAGGAGCTCAAAGCCTCTTGGTCCATGCTAATACAACCGTCCTCTTGTTTAAAGTCTTCGTTATAGAACATCTCCTCCACAGTTAGAGATGGCATTTGGATGCCACCATCCTGAAGAGGGACTGCGATGGGAGCACTCGAGACATTACACTCTGGGGTGGGGTAGAATGGATCAAATTGTTGAGATGTGCCAGGATCATTCATGAGCAAGTCTTGacct

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0007399 nervous system development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019139 True 3361 lncRNA 0.37 1 17122412 17125772

Neighbor

gene id symbol gene type direction distance location
XLOC_009113 mos coding downstream 22852 17098351 ~ 17099560 (-)
XLOC_009112 lgals17 coding downstream 48019 17059622 ~ 17074393 (-)
XLOC_009111 hip1 coding downstream 97200 16935390 ~ 17025212 (-)
XLOC_009110 BX571762.1 coding downstream 214282 16900902 ~ 16908130 (-)
XLOC_009109 TMEM120A coding downstream 237500 16873690 ~ 16884912 (-)
XLOC_009115 mrpl28 coding upstream 2510 17128282 ~ 17138640 (-)
XLOC_009116 cul5a coding upstream 21230 17147002 ~ 17169935 (-)
XLOC_009117 itgae.2 coding upstream 51863 17177635 ~ 17190540 (-)
XLOC_009118 itgae.1 coding upstream 70755 17196527 ~ 17213723 (-)
XLOC_009119 CU861501.1 coding upstream 88290 17214062 ~ 17220226 (-)
XLOC_009107 BX649487.1 non-coding downstream 424496 16697515 ~ 16697916 (-)
XLOC_009105 NA non-coding downstream 567239 16554382 ~ 16555173 (-)
XLOC_009093 NA non-coding downstream 1411239 15708065 ~ 15711173 (-)
XLOC_009092 NA non-coding downstream 1447260 15669244 ~ 15675152 (-)
XLOC_009120 NA non-coding upstream 109093 17234865 ~ 17252051 (-)
XLOC_009121 NA non-coding upstream 153781 17279553 ~ 17285143 (-)
XLOC_009122 CR848791.2 non-coding upstream 253740 17379512 ~ 17382582 (-)
XLOC_009125 NA non-coding upstream 625378 17751150 ~ 17754926 (-)

Expression


Co-expression Network