XLOC_009109 (TMEM120A)


Basic Information

Item Value
gene id XLOC_009109
gene name TMEM120A
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 16873690 ~ 16884912 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017937
ATTGCAATCACTAAGAAATAAGAGATACGACGAAGACTACCAACTGACATGCTTCTAAACTGAAGATCTCTGAATATCCagcaaattatttaacatttctgcTTACATCAGTTTGTTATTATCAGATCTGCCTTTTAACTAAGAGGAATCTTATAATTTAAACTGAACAACACTACAAACTGAACAACTACATGTCGAAGGCACTCGCAGCAGCTCTTCAAGAATGGAAGACTCAGGAGAAAGAATTTCAGCAGCTTCAGGAGACCCATCGGCTTTACCTGCAGAAATTAGAGGAAGTGTCCAAACTTCAGAAAAGCTTTGCTGCCTCTTTGGCACGACAGAAAAAGAATTTAAAGGAGAATTTAAAATCtttgattaaACTCAATAAAGGCCTGACAGAAGAGGAGAGCAATGCAGTAAAGGAGGCCAAAGATCACATCCGAAATATGCCAAGCCAGATCTTTCAAATGGAAGCATTTCTTCCAAAGAAGAATGGGATTTATCTCAGCCTTGTCCTTGGGAGCGTGAATGTTAACCTTCCTAGCAAAGATGCCAAAGCTGAATACAAAGATGAGTATGAGCGGTTTAAACTGTATGTGACGGTGACTCACTTCCTGCTCACCTTCATCTGCTGCTTCTTCGTCAACTACAGATTCTTGGACGCTCTTCTCAACTTCCTGCTGGTTTGGTATTACTGCACACTGACCATCCGTGAAAGCATCCTCATCAGCAATGGATCCAGgattAAAGGTTGGTGGGTTTTCCACCACTACATTTCCACCTTTCTGTCTGGAGTCATGCTAACCTGGCCGGATGGTGAAACATACCAGTCTTTCAGGACACAGTTTCTGGCCTACTGCTTGTATCAAAGCTTTGTGCAGTATCTTCAGTACTACTACCAGAGCGGTTGCCTCTACAGACTCAAAGCTTTAGGAGAAAGACACAACCTGGATTTGACTGTTGAGGGATTTCAGTCGTGGATGTGGCGAGGACTGACTTTCCTTCTTCCGTTTCTCTTCCTTGGTCATTTTTGGCAGTTCTGCAACGGCTTTTCCCTCTTCAGACTGGCCCGGCTCCCTGAATGTAGAGAATGGCAGGTGTCCATGTGTGGCTTCTGCTTTATGGTTCTGTTTGCTGGAAACTTTTTCACTACACTTGCAGTCGTCCAACACAAGCGCAAAACCCAAAGAACCAAGAGCCTGTGAAACTGTCAGTGAGGACAACAGACTATGCCATGATTCATTTGATGAAATCTAACTTTGTAAtatgtgttttattatgttttttaaatatgcagAATATGcctttttgattattattattattattattattattaaagatctGTAATAATACTTGTCTGTAATTAGTTGGAATTTCTAAAATCATTGattaaacacataataaaagtgaatAATGATAGTAAAAATTGTTATGCATTGTTGTTTTAGTATATCCTTGAGATAGGCATGCTGTTTCATTAGTAGTTAAATTTTGTGTTTtcattaacaatttaatttaaattttagcaTTTTATCTGTGTTTGTTGTTATCTCaccaaatattaatttcttaaatCTTCTGAAGTTAAACCATAGCATTTTtgtctgaaaataaatatatacatgtttGGAAATGcca

Function

symbol description
tmem120a Predicted to enable ion channel activity. Predicted to be involved in detection of mechanical stimulus involved in sensory perception of pain; fat cell differentiation; and ion transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in prechordal plate. Orthologous to human TMEM120A (transmembrane protein 120A).

GO:

id name namespace
GO:0045444 fat cell differentiation biological_process
GO:0050966 detection of mechanical stimulus involved in sensory perception of pain biological_process
GO:0006811 ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-21 Predicted to enable ion channel activity. Predicted to be involved in detection of mechanical stimulus involved in sensory perception of pain; fat cell differentiation; and ion transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in prechordal plate. Orthologous to human TMEM120A (transmembrane protein 120A).

Ensembl:

ensembl_id ENSDARG00000042379

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017937 True 1641 mRNA 0.38 12 16873690 16884912

Neighbor

gene id symbol gene type direction distance location
XLOC_009108 tyw1 coding downstream 1090 16739160 ~ 16872600 (-)
XLOC_009106 caln1 coding downstream 169273 16564692 ~ 16704417 (-)
XLOC_009107 BX649487.1 coding downstream 175774 16697515 ~ 16697916 (-)
XLOC_009105 NA coding downstream 318517 16554382 ~ 16555173 (-)
XLOC_009104 fam222bb coding downstream 489506 16377263 ~ 16384184 (-)
XLOC_009110 BX571762.1 coding upstream 15990 16900902 ~ 16908130 (-)
XLOC_009111 hip1 coding upstream 50478 16935390 ~ 17025212 (-)
XLOC_009112 lgals17 coding upstream 174710 17059622 ~ 17074393 (-)
XLOC_009113 mos coding upstream 213439 17098351 ~ 17099560 (-)
XLOC_009114 NA coding upstream 237500 17122412 ~ 17125772 (-)
XLOC_009093 NA non-coding downstream 1162517 15708065 ~ 15711173 (-)
XLOC_009092 NA non-coding downstream 1198538 15669244 ~ 15675152 (-)
XLOC_009091 NA non-coding downstream 1365297 15496101 ~ 15508393 (-)
XLOC_009119 CU861501.1 non-coding upstream 329150 17214062 ~ 17220226 (-)
XLOC_009120 NA non-coding upstream 349953 17234865 ~ 17252051 (-)
XLOC_009121 NA non-coding upstream 394641 17279553 ~ 17285143 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_02247523_02250009 NA coding CI01000053 null 2247224 ~ 2250184 (+)