XLOC_009118 (itgae.1)


Basic Information

Item Value
gene id XLOC_009118
gene name itgae.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17196527 ~ 17213723 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017950
GGGAGGGTTTGACAGTCAGCAGTAAATGAGTGCTGTTCTGCTTTCTCAAGACCAAAACAAGCTGCTTTGTATCTCGATGTGTCAATGtgttttctttaaagaaaattgaTATTGATCAATCTACACAAAAATGTACAGAAAACTGCTATTTGTGATGGtactgtgtAATGCAGCTGGGTTTAACATTCAAATATCTCCAGTGAAACATTTCACAAATGAGGATCCACTCTTTGGCCAAACCATCATTCAGGCAAAAGATGGAATTTTTGTTCCCTCCCCAACATATGGAAGACTTTTCAAGTGCACTCTAGACAATGAATGCACCAAAGTAAACATTAACGATGAGAACCCAAAAGGCATGAGACCAGTAGCATCAGTGGCTAGCCTGACATCACAGGAACAACATGTTGTGATGTGTAATCAAGTTAGAACAGAGAACAGAGGAACTGAGTATTTGAATGGAATTTGCACACTTGTGAGTCCTTCTGGAAAAGTCAAACTATATCCTGCTGAATTAGacaacaacaaaaacaacaacaacaacaacaacaacaacaacaacaaataccaAGGTGGAAGGATCAATCAAGGTCCTGGGACAGAGATTGCTTTCGTTCTGGATGGTTCTGGCAGCATTCAAGATGATGACTTTCAGAAAGCGAAAGACTTCATCTACAATGTCATGTCCAATGTTTGGAAAACATGTTTCGATTGTAATTTTGCAATAGTGCAATACGGTAGTTTGATCAGAACTGAGCTCTCGTTACTAGACAATGAGGATCGCGTGGGATCCTTGCTAAAGGTCaaacaaataaagcaaatttACAATCTCACAAAGACGGCCTCTGCCATCAATCACGTCCTCACAGATATCTTCATCCCTGAGAATGGATCAAAAGATAACTCTGCAAAAATAATAATCGTCTTGTCTGATGGAAAGATTCTGGGAGACCCTATGACTCTTGATGAAGTTTTGAACAAGCCCCAAATGAAAGGTGTCACTCGCTACTCCATAGGGGTTGGCGATGGCATCCTGAAAAACCTTGATGCAACCGAAGAGATGATGCAAATAGCAGATCCTGGAAAGTATTATAATGTTTCCAGTTATAGGGCATTAAACGATATTGTGTCCTCGCTGGAAAGAGGGATAATTGGAACTAAAGATCCTGGGACAGAGATTGCTTTCGTTCTGGATGGCTCTGGCAGCATTCAAGATGATGACTTTCAGAAAGCGAAAGACTTTATCTACAATGTCATGTCCAATGTTTGGAAAACATGTTTCGATTGTAATTTTGCAATAGTGCAATACGGTAGTTTGATCAGAACTGAACTCTTGTTACTAGACAATGAGGATCGCGCGGGATCCTTGCTAAAGGTCaaacaaataaagcaaatttACAATCTCACAAAGACGGCCTCTGCCATCAATCACGTCCTCACAGATATCTTCATCCCTGAGAAGGGATCAAAAAATAacactgcaaaaataataatCGTCTTGTCTGAtggagagattctggaagaccCTATGACTCTTGATGAAGTTTTGAACAAGCCCCAAATGAAAGGTGTCACTCGCTACTCCATAGGGGTTGGCGATGGCATCCTGAAAAAACCTAATGCAGTCAAAGAGATGATGCAAATAGCAGATCCTGGAAAGTATTATAGTGTTTCCAGTTATGGCGCATTAAATGATATTCTGTCCTCACTGGAAAGAGAGATAATTGGAACTGAAGGAGACTCTGTCACAACAACGGTCCTGCAGATCAACTAGTGCATCTAAGCCAAGGGCCATACACCCTCGAGGACCATATGTCTTTCACCACTGCCAGAACCACAGCTGCAAGAATCTTCGATGTCGCTGCTTGCCACTGCCACAAGAGCCTGCTGACCCACCAAGGTTGCCTGAACCACTGGTGCCTACTGACCTAGAGCCTCCTAACCCTATGCCTCCTAACCCAGAGAAATCAGATTCAGCTCTGCTCCACACTCCAGGCTGTCCACGAATCAGAGACAAGCTTGtgaatgtttagatttttttccttAAAGTACAGCTTAACAGTAACAAAAActgatataattaatatttttatatttttagaaaatTGTGAATAGATTTTATTAACCAGGttatataaacattttgaatGTAAGATAACATAGCAGTTTTAAAATAGCAACATTCTGTTTTTACCTCATTTGtgtttaatataaacatttaaaaggtcacactttacaataaggttcattagttaatgttaattaatgcatttactaacaggaacaaacaatgaacaatacatttgctactgtatttgttcatgttagttaacgttagttaatgaaaatacagttgttcattgttagttcatgttaactcgtggtgcattaactaatgttgacaagcatggacttggatgttaataatgcattagtaaatgttcaattatgattaataaatgctgtacatgtgttgttcatgattagttcatgttagtaaatgcattaactaatgaaccttattgtaaagtgttacccatttaaATTGTGGCTCTAATAAAAGTGGCTTTCATCACTGATGTATTTGTGTATTTCCTaaatagagaag

Function

symbol description
itgae.1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ITGAE (integrin subunit alpha E).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-125 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ITGAE (integrin subunit alpha E).

Ensembl:

ensembl_id ENSDARG00000098012

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017950 True 2608 mRNA 0.38 16 17196527 17213723

Neighbor

gene id symbol gene type direction distance location
XLOC_009117 itgae.2 coding downstream 5987 17177635 ~ 17190540 (-)
XLOC_009116 cul5a coding downstream 26592 17147002 ~ 17169935 (-)
XLOC_009115 mrpl28 coding downstream 57887 17128282 ~ 17138640 (-)
XLOC_009114 NA coding downstream 70755 17122412 ~ 17125772 (-)
XLOC_009113 mos coding downstream 96967 17098351 ~ 17099560 (-)
XLOC_009119 CU861501.1 coding upstream 339 17214062 ~ 17220226 (-)
XLOC_009120 NA coding upstream 21142 17234865 ~ 17252051 (-)
XLOC_009121 NA coding upstream 65830 17279553 ~ 17285143 (-)
XLOC_009122 CR848791.2 coding upstream 165789 17379512 ~ 17382582 (-)
XLOC_009123 tubd1 coding upstream 183598 17397321 ~ 17406056 (-)
XLOC_009110 BX571762.1 non-coding downstream 288397 16900902 ~ 16908130 (-)
XLOC_009107 BX649487.1 non-coding downstream 498611 16697515 ~ 16697916 (-)
XLOC_009105 NA non-coding downstream 641354 16554382 ~ 16555173 (-)
XLOC_009093 NA non-coding downstream 1485354 15708065 ~ 15711173 (-)
XLOC_009125 NA non-coding upstream 537427 17751150 ~ 17754926 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G484492 NA non-coding CI01000339 null 5538156 ~ 5543421 (-)
rainbow trout (Oncorhynchus mykiss) G489159 NA non-coding NC_048570.1 CM023224.2 25275786 ~ 25276042 (-)