XLOC_009122 (CR848791.2)


Basic Information

Item Value
gene id XLOC_009122
gene name CR848791.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17379512 ~ 17382582 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017953
CATCGTACATGCTCTGGGTGTCTTGAGGAGCTTGTCTTTGGAGGATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTATCATTACAGTgaagtaaaataatttaacagactGTTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGtggatacccttccagccgcaacccagtactgggaaacgcccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaataaccactggcccagccggggcttgaatcagcaaccttcttgctgtgaggcgacggtgcttaccactgtgctgccctatgtGCTCTATGCGGAGGCCACTAGAGATcgtgacctgtgaagagatgatgccaccatagaggacttctagatGTATCCATAATCCTGAAACAGACCGTATCATGAGCAGATgcagtggtggtcatggaggagtggagagcatgagactgattaatgaaagaccccagtgacagatgagtgCCCACATTGATCCTGTGGTCCAGCCTGAAAACCcactggtgacctactcacacctgcagcttctccacaatggatgCCCAGTGTTCTtcagcctccagcgcctagactgcagctttgcAGGTGAAGTGTAGCCAgaagagaaatggttg
>TCONS_00017954
ATTGGATCATGGATGCGCTAATGGACAACACGGATGACAAGGAAAGTgcCATCGTACATGCTCTGGGTGTCTTGAGGAGCTTGTCTTTGGAGGATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTATCATTACAGTgaagtaaaataatttaacagactGTTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGAGGCCACTAGAGATcgtgacctgtgaagagatgatgccaccatagaggacttctagatGTATCCATAATCCTGAAACAGACCGTATCATGAGCAGATgcagtggtggtcatggaggagtggagagcatgagactgattaatgaaagaccccagtgacagatgagtgCCCACATTGATCCTGTGGTCCAGCCTGAAAACCcactggtgacctactcacacctgcagcttctccacaatggatgCCCAGTGTTCTtcagcctccagcgcctagactgca
>TCONS_00017955
CTGCACTCTCAGCACCGCATTTTTAGGACCGCATCTTTAGGACCGCATCTTTAGGACCCTAGTTTTTTGTGATAGCGTCAACTGTCGGATTGGATCATGGATGCGCTAATGGACAACACGGATGACAAGGAAAGTgcCATCGTACATGCTCTGGGTGTCTTGAGGAGCTTGTCTTTGGAGGATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTATCATTACAGTgaagtaaaataatttaacagactGTTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGtggatacccttccagccgcaacccagtactgggaaacgcccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaataaccactggcccagccggggcttgaatcagcaaccttcttgctgtgaggcgacggtgcttaccactgtgctgccctatgtGCTCTATGCGGGTGAGTgggattgacaaaccacctggAGGACACACTCTtgctgtcttaatgcaccagacattttgaaATCATGTGCATTTCATGTTTAATTGTATAACTGCTATTTTATCtcatagcacttcatttttgtcttgatatttaatatctcttgttttaaatacactatgagCAGAATCTGCACTAATTATTTTCCTTGTtccctatttccacctggggatatttATCCAGAGGCCACTAGAGATcgtgacctgtgaagagatgatgccaccatagaggacttctagatGTATCCATAATCCTGAAACAGACCGTATCATGAGCAGATgcagtggtggtcatggaggagtggagagcatgagactgattaatgaaagaccccagtgacagatg
>TCONS_00017956
GCATTTTTAGGACCGCATCTTTAGGACCGCATCTTTAGGACCCTAGTTTTTTGTGATAGCGTCAACTGTCGGATTGGATCATGGATGCGCTAATGGACAACACGGATGACAAGGAAAGTgcCATCGTACATGCTCTGGGTGTCTTGAGGAGCTTGTCTTTGGAGGATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTATCATTACAGTgaagtaaaataatttaacagactGTTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGtccctttatttatcaggggtttccagagcagaatgaaccgcaaacttgtgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacgcccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaataaccactggcccagccggggcttgaatcagcaaccttcttgctgtgaggcgacggtgcttaccactgtgctgccctatgtGCTCTATGCGGAGGCCACTAGAGATcgtgacctgtgaagagatgatgcca
>TCONS_00017957
gcCATCGTACATGCTCTGGGTGTCTTGAGGAGCTTGTCTTTGGAGGATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTATCATTACAGTgaagtaaaataatttaacagactGTTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGGTGGGTATTGCTCTTATATactaaaaaatatggagttgGCAGTGAGGTTTCCTGTTTGGTtctccctatatatatatatataaacttattataccacttatattaaatattaatctaaattTAATTGCATAACAATTGATTAACCTTTTGAGTTCATATACATGATTTTACATATTCAAGAAtatctatatacattttttttctttacgacttagtccctttatttatcaggggtttccagagcagaatgaaccgcaaacttgtgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacgcccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaataaccactggcccagccggggcttgaatcagcaaccttcttgctgtgaggcgacggtgcttaccactgtgctgccctatgtGCTCTATGCGGGTGAGTgggattgacaaaccacctggAGGACACACTCTtgctgtcttaatgcaccagacattttgaaATCATGTGCATTTCATGTTTAATTGTATAACTGCTATTTTATCtcatagcacttcatttttgtcttgatatttaatatctcttgttttaaatacactatgagCAGAATCTGCACTAATTATTTTCCTTGTtccctatttccacctggggatatttA
>TCONS_00017958
CATGGATGCGCTAATGGACAACACGGATGACAAGGAAAGTgcCATCGTACATGCTCTGGGTGTCTTGAGGAGCTTGTCTTTGGAGGATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTATCATTACAGTgaagtaaaataatttaacagactGTTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGtccctttatttatcaggggtttccagagcagaatgaaccgcaaacttgtgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacgcccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaataaccactggcccagccggggcttgaatcagcaaccttcttgctgtgaggcgacggtgcttaccactgtgctgccctatgtGCTCTATGCGGGTGAGTgggattgacaaaccacctggAGGACACACTCTtgctgtcttaatgcaccagacattttgaaATCATGTGCATTTCATGTTTAATTGTATAACTGCTATTTTATCtcatagcacttcatttttgtcttgatatttaatatctcttgttttaaatacactatgagCAGAATCTGCACTAATTATTTTCCTTGTtccctatttccacctggggatatt
>TCONS_00017959
ATTGGATCATGGATGCGCTAATGGACAACACGGATGACAAGGAAAGTGTATGTTTTATCTGGCGAATAAGAAGGGATGGCCAATATGATTGGATTCCTTAGGCTCATTGtaggaagaaaagaaaacaaactacagGAATATTTTCATTGAGGTTATCGCAAACTgcCATCGTACATGCTCTGGGTGTCTTGAGGAGCTTGTCTTTGGAGGATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTATCATTACAGTgaagtaaaataatttaacagactGTTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096955

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017953 False 653 lncRNA 0.49 5 17379512 17381351
TCONS_00017954 False 478 lncRNA 0.47 5 17379550 17382494
TCONS_00017955 False 865 lncRNA 0.44 5 17379665 17382582
TCONS_00017956 False 567 lncRNA 0.47 6 17379788 17382566
TCONS_00017957 False 847 lncRNA 0.38 3 17379832 17381353
TCONS_00017958 False 670 lncRNA 0.43 5 17379834 17382487
TCONS_00017959 True 318 lncRNA 0.39 5 17380525 17382494

Neighbor

gene id symbol gene type direction distance location
XLOC_009121 NA coding downstream 94369 17279553 ~ 17285143 (-)
XLOC_009120 NA coding downstream 127461 17234865 ~ 17252051 (-)
XLOC_009119 CU861501.1 coding downstream 159286 17214062 ~ 17220226 (-)
XLOC_009118 itgae.1 coding downstream 165789 17196527 ~ 17213723 (-)
XLOC_009117 itgae.2 coding downstream 188972 17177635 ~ 17190540 (-)
XLOC_009123 tubd1 coding upstream 14739 17397321 ~ 17406056 (-)
XLOC_009124 adamts15b coding upstream 220906 17603488 ~ 17619306 (-)
XLOC_009125 NA coding upstream 368568 17751150 ~ 17754926 (-)
XLOC_009126 CT573342.2 coding upstream 406133 17788715 ~ 17813680 (-)
XLOC_009127 BX901923.1 coding upstream 461609 17844191 ~ 17870090 (-)
XLOC_009114 NA non-coding downstream 253740 17122412 ~ 17125772 (-)
XLOC_009110 BX571762.1 non-coding downstream 471382 16900902 ~ 16908130 (-)
XLOC_009132 CR388163.2 non-coding upstream 769083 18151665 ~ 18151780 (-)
XLOC_009135 CR388163.1 non-coding upstream 795359 18177941 ~ 18180824 (-)
XLOC_009145 AL845312.1 non-coding upstream 1711929 19094511 ~ 19095107 (-)

Expression


Co-expression Network