RNA id: TCONS_00017958


Basic Information

Item Value
RNA id TCONS_00017958
length 670
lncRNA type retained_intron
GC content 0.43
exon number 5
gene id XLOC_009122
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17379512 ~ 17382582 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGGATGCGCTAATGGACAACACGGATGACAAGGAAAGTgcCATCGTACATGCTCTGGGTGTCTTGAGGAGCTTGTCTTTGGAGGATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTATCATTACAGTgaagtaaaataatttaacagactGTTGACAAACAACTGACGAAAGAAGAGAGACCATTCAATAGtccctttatttatcaggggtttccagagcagaatgaaccgcaaacttgtgcagcatatgttttacacagtggatacccttccagccgcaacccagtactgggaaacgcccatttacactcatacacttgaacatggggagaacatgcaaactccacacagaaataaccactggcccagccggggcttgaatcagcaaccttcttgctgtgaggcgacggtgcttaccactgtgctgccctatgtGCTCTATGCGGGTGAGTgggattgacaaaccacctggAGGACACACTCTtgctgtcttaatgcaccagacattttgaaATCATGTGCATTTCATGTTTAATTGTATAACTGCTATTTTATCtcatagcacttcatttttgtcttgatatttaatatctcttgttttaaatacactatgagCAGAATCTGCACTAATTATTTTCCTTGTtccctatttccacctggggatatt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000149845

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017952 lncRNA downstream 94691 17279553 ~ 17285143 (-) True XLOC_009121
TCONS_00019140 lncRNA downstream 127783 17234865 ~ 17252051 (-) True XLOC_009120
TCONS_00017951 lncRNA downstream 159608 17214062 ~ 17220226 (-) True XLOC_009119
TCONS_00019139 lncRNA downstream 254062 17122412 ~ 17125772 (-) True XLOC_009114
TCONS_00017938 lncRNA downstream 471704 16900902 ~ 16908130 (-) True XLOC_009110
TCONS_00017963 lncRNA upstream 368663 17751150 ~ 17754867 (-) False XLOC_009125
TCONS_00019141 lncRNA upstream 368663 17751150 ~ 17754926 (-) True XLOC_009125
TCONS_00017965 lncRNA upstream 461704 17844191 ~ 17865563 (-) False XLOC_009127
TCONS_00017982 lncRNA upstream 784294 18166781 ~ 18169348 (-) True XLOC_009134
TCONS_00019142 lncRNA upstream 1902677 19285164 ~ 19286600 (-) True XLOC_009147
TCONS_00017950 mRNA downstream 166111 17196527 ~ 17213723 (-) True XLOC_009118
TCONS_00017949 mRNA downstream 189294 17177635 ~ 17190540 (-) True XLOC_009117
TCONS_00017948 mRNA downstream 209899 17147002 ~ 17169935 (-) True XLOC_009116
TCONS_00017947 mRNA downstream 241194 17128282 ~ 17138640 (-) True XLOC_009115
TCONS_00017946 mRNA downstream 280274 17098351 ~ 17099560 (-) True XLOC_009113
TCONS_00017960 mRNA upstream 14834 17397321 ~ 17406056 (-) True XLOC_009123
TCONS_00017961 mRNA upstream 221001 17603488 ~ 17618800 (-) False XLOC_009124
TCONS_00017962 mRNA upstream 226058 17608545 ~ 17619306 (-) True XLOC_009124
TCONS_00017964 mRNA upstream 406228 17788715 ~ 17813680 (-) True XLOC_009126
TCONS_00017966 mRNA upstream 479720 17862207 ~ 17869115 (-) False XLOC_009127
TCONS_00017944 other downstream 308588 17061577 ~ 17071246 (-) False XLOC_009112
TCONS_00017936 other downstream 507234 16794111 ~ 16872600 (-) True XLOC_009108
TCONS_00017917 other downstream 1419366 15959376 ~ 15960468 (-) True XLOC_009094
TCONS_00017896 other downstream 1995851 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017891 other downstream 2155132 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017972 other upstream 601078 17983565 ~ 18002215 (-) False XLOC_009128
TCONS_00017973 other upstream 638058 18020545 ~ 18023109 (-) True XLOC_009128
TCONS_00017978 other upstream 769178 18151665 ~ 18151780 (-) True XLOC_009132
TCONS_00017983 other upstream 795454 18177941 ~ 18180824 (-) True XLOC_009135
TCONS_00018000 other upstream 1712024 19094511 ~ 19095107 (-) True XLOC_009145

Expression Profile

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