RNA id: TCONS_00017952


Basic Information

Item Value
RNA id TCONS_00017952
length 849
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_009121
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17279553 ~ 17285143 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAAAATTGTCATGTTTGGTTTCCACTCtaaagatataaataaaattgaagtaaaatattactctatcacaaattatttaaaaaaactatttatttacattaaaaaatgtaaaaataagtgtttttttctttacaCATTGAGTCAAGAGTCATATTAAAATCCGCTGGGACCACAAACAGGGATTATGTTCTGAAATCTGACATTATAAATTCTTTCATATTCAAAATCTGTGGTGAATATTTGATCTTTTCATATTCTCTTTCTCTGCTGTTTTCTCTCCAAAAAGCGAGCACGAGCTTCTGTAATTGAGCTTTCATCGTTTCTCTTCTCCAGCTTCTTTGCTGCATCCTCTCTGGCctctatttaaacaaacaaaaaaagtattacaAAAAAACAAGATGGAATCTGACATAGCTCAGCATCTTCAAACGCACCTGCTTGTCTTTTTGCTGCCTCTTTCTTTTCCCACTGGACCATCTCTTCATCCGTTACTTCTTCTCTAGCAACGCTACTCAGCTCATAGACATCAATTTCATGCAGTTTTGGCAGCAGGTCTTTCACCCAGTCATAACGGATGGGGCAAACGGTTCTCACGTACACCCGTGAGGTCACCAACACGTCATGAAAAATGATCCAATCCAGCTGCAATTCTTGACCGAAGAGCTGAATAAAAGATGTATAAATTAAAATGGGTTTGGAACATTCTGAATGAACTTTAGATTGCGTTTAAAGGAACAGTTtgataaaaaaacatacagtcaTTATTTTCTAGCTCTAGAATTCAATCTTGTATGCCTTTAATAAGGCTGTCTGTTTAATTAACACATTGACTTAAGGTAGCATGAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019140 lncRNA downstream 27502 17234865 ~ 17252051 (-) True XLOC_009120
TCONS_00017951 lncRNA downstream 59327 17214062 ~ 17220226 (-) True XLOC_009119
TCONS_00019139 lncRNA downstream 153781 17122412 ~ 17125772 (-) True XLOC_009114
TCONS_00017938 lncRNA downstream 371423 16900902 ~ 16908130 (-) True XLOC_009110
TCONS_00017934 lncRNA downstream 581637 16697515 ~ 16697916 (-) True XLOC_009107
TCONS_00017953 lncRNA upstream 94369 17379512 ~ 17381351 (-) False XLOC_009122
TCONS_00017954 lncRNA upstream 94407 17379550 ~ 17382494 (-) False XLOC_009122
TCONS_00017955 lncRNA upstream 94522 17379665 ~ 17382582 (-) False XLOC_009122
TCONS_00017956 lncRNA upstream 94645 17379788 ~ 17382566 (-) False XLOC_009122
TCONS_00017957 lncRNA upstream 94689 17379832 ~ 17381353 (-) False XLOC_009122
TCONS_00017950 mRNA downstream 65830 17196527 ~ 17213723 (-) True XLOC_009118
TCONS_00017949 mRNA downstream 89013 17177635 ~ 17190540 (-) True XLOC_009117
TCONS_00017948 mRNA downstream 109618 17147002 ~ 17169935 (-) True XLOC_009116
TCONS_00017947 mRNA downstream 140913 17128282 ~ 17138640 (-) True XLOC_009115
TCONS_00017946 mRNA downstream 179993 17098351 ~ 17099560 (-) True XLOC_009113
TCONS_00017960 mRNA upstream 112178 17397321 ~ 17406056 (-) True XLOC_009123
TCONS_00017961 mRNA upstream 318345 17603488 ~ 17618800 (-) False XLOC_009124
TCONS_00017962 mRNA upstream 323402 17608545 ~ 17619306 (-) True XLOC_009124
TCONS_00017964 mRNA upstream 503572 17788715 ~ 17813680 (-) True XLOC_009126
TCONS_00017966 mRNA upstream 577064 17862207 ~ 17869115 (-) False XLOC_009127
TCONS_00017944 other downstream 208307 17061577 ~ 17071246 (-) False XLOC_009112
TCONS_00017936 other downstream 406953 16794111 ~ 16872600 (-) True XLOC_009108
TCONS_00017917 other downstream 1319085 15959376 ~ 15960468 (-) True XLOC_009094
TCONS_00017896 other downstream 1895570 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017891 other downstream 2054851 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017972 other upstream 698422 17983565 ~ 18002215 (-) False XLOC_009128
TCONS_00017973 other upstream 735402 18020545 ~ 18023109 (-) True XLOC_009128
TCONS_00017978 other upstream 866522 18151665 ~ 18151780 (-) True XLOC_009132
TCONS_00017983 other upstream 892798 18177941 ~ 18180824 (-) True XLOC_009135
TCONS_00018000 other upstream 1809368 19094511 ~ 19095107 (-) True XLOC_009145

Expression Profile

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