XLOC_009128 (phldb1b)


Basic Information

Item Value
gene id XLOC_009128
gene name phldb1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17948397 ~ 18091157 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017969
GCTCCATCCGTTTATTGACCAGCGCAGTAACATCTGTTATCAGGGTTGTAGCCGACAGGCAGGAATGTGGGATTTAGCTCAAAGCAGCATGTAAAAACACGTCTGTGATAGTTTGAATAGGAGCAGGTATCCTCTGAATGAAGATGTAGAGGCACTGGAGAGACAGAAAATAGTGTTTCTTGAGTCTCTGGTGCAGTAAATGTTTGATTCAATGCTTTGAAATGGAGGCGTTGTACTTATTCGACAACTGgaaaaagGATTCTCATGTCCCCGAGCAAGTAAGTGACAGTACACTGGCCATGGATACTTTGAACCAAAATCTTAGCCATGGGCATCAGTCTCATCAGGTGCTCCAGaGTACTCCACTGGATCTTATTGAGACTGGAAAGGCACTGAAGGTTCAAGCAGAGCGCCCCCATTTAGTCAGTCTGGGAAGTGGGCGTCTCAGTACAGCCATCACCCTCTTACCCCTGCCTGAAGgGAAGACGACTGTGGGTCATGGAGCCATGGACATCAGCATACAGGGCCCCGGGGTCGCAGCTCAGCACTGCTTTATTGAGAACAGGGCTGGAATCATCACACTTCACCCCTGTGGAAACCAGTGCAGCATGGACGGACTGCCGGTCAACAAACCTGTGCGACTCTCTCAAGGCTGCATGCTGTGTTTCGGCCAATCCGCCTTCTTCCGCTTCAACCACCCCGAGGAGGCTTTCCGAATGAAAAGCATGATGCCCGAGGGAGGACAGACAGCCAGTGTGAAAAACTGGACCCACAAAGATTCAGAGAACCTGGTCAATGGGAACCACTCTTCAGGAGAGGCAAAATCCCACTTGGTTTCCAACGAGAGAGTGCGCCCTGAGCACAGTGCCATCGTCAGTTCCATTGAGAAGGACCTTCAGGACATTATGGACTCATTAGTCATGGATGACCCTCAGCCCTCATCCTCCGAGTCAAAGAAGCCCTCTAGTCAGTCCATCTCACAGTCTCCCCTTTCTCCGATGTTAAATGGAGGGGGGCGCTTCCTTCTCTCTCCCCCAACGAGCCCTGGTGCTATGTCTGTGGGCTCCAGTTATGAGAATAACTCCCCTCCTTTCTCTCCTCTGTCATCTCCCTCGGCTGCCAGCAGTGGCAGCTACACCACTCTCTCACCAATTGGTTGTCAGGACCAGCCTCACATGCTTCCTCCTGTGCCAGTGAGGTCTTCTAGTTACAATTATACCAGCCAGCCACCCATACCTCAGCCACGGACCATACTGCCCAGCTATTCCAGTGGCAGCAGTGGGCCAAAGGTGCCTGAGAGTCCCAGACTCCAGCGAAAGGCGCTTTTAGAAGCACCGCCAAGCCCAAAGCCAAGCCGTAGGGGGTTGAACCAAGACAGCTCGGTGGCTAAAACCCCAGACAGCCCCATACAGACTCACATTCTGCCCTCAGTCTCCATCTCTACAGCTCCGACTGATGTCCCATCTGTTAGTCGGGTACCAGTTCCAGGTAGTCCTAGATTAGCCACCAAATTCTCCACTGCGTCCTCACCTGCCTCACCCTCTAGTCCCAGAACCAAAACTACCATTGTCCTCCAAGATCGACCCTCAAGTCCTTTCCGGGAGCAACCTCAGCCAGATCGTTCTTTGACGTCCAGCCCCTCTCACCAACTCTCCCCACCATCAAGATCTTTCCAGCCCCCATTGGACCCCATTGTTCACATCATTCAAGGTGGACCTTCACACCCACATCCTCGAACACTGCAGCCTCCAGAAAGTCCGCGGCTGGCCCGCAGAAATCTTGAAGGGAGCAGCATGAGGGAACTCCCCCCTCTCAGTCCCTCCATAGCTCGCAGGGGGGTTCCTGTGCTCCCAGGTGCTCTACCAGGAACCCTGCGAACTCCAGAGAGCCCATCCCCAAGAATGGTGCCAGAGAGTCCCAGACTCAGGAGGAAAACAGGGTCACCTACAGAGGAGCCATTCAGTCCTCGTGCGATGCGCACTCGTAGTCCTTCGCCCACCTCTGGACTGACTGGCGAAAGCAGTGGACGGAAGGGAAGTTTTGGGAACTCACTCTCTTCTGCCTTCAGCCTAAGTTCTCTGCCTGGGTCTTCCCCACGATCTAGTCCCAGGAGCCACCGAAAGATGTCAGCAGGCCACAGAGACCTCCGGATGCCTCACCCAGGCATGAGGGAGCGCAAAAACAGCATCACAGAGATCAGCGACAACGAGGATGACCTTCTGGAGTACCATCGACGCCAAAGAGAAGAGCGACTCAGAGAGCAGGAAATGGAGAGACTGGAACGGCAGCGGCTGGAGACAATCTTGAACCTCTGCGCTGAGTATAACAAGGGCGACGGGCCGCCGGGTGATTTGGGCAGGATGGGCGTCTCTGGGCTTGGCTCGAGGGACGGGCTTAACGTCAGGCGTCCTTCAATGGACAGCGTGAACAGCGCTTCACTAAGAGCGACTCAAAGACAACGGGAAAGCCAAGAGGACAACCTGAAGGAGGATAGCAGTAGCACTGAGAGTGCGCAGCTGGACGGACGGACACCTGCTCTGCTAAATGGACAGAATGGACAGGCTGAGGAGTCTCTGGGTTCGGGCAGCATTGGCCGTCTGGAGCTGGGCTACCTGGAGGAGGAGCGGGTTCGAGTGCTGGCAAAGGTAGATGAGCTCAAAGCTCGAATCACAGAACTGGAGCAGCAACTTCAGGAGTCTAAACAAGAGGCGGAGATGGAGAGAGCTCTGCTGCAGGGAGAAAGACAGGCTGAGATGGAGCAAATCGAGACTGAGACCGAGATTATCAACCAGCTGCAGCGCAAACTCACTGAACTGGAGAGCAGCATCCAGAGAGAGAAGGACAAGGAGAGGGCTAATGTTGACGCGGAGCGGGAAGCCCTGGAGAGGCTTCAGGATGGGTACAATGAGTTGACGAGCCAGCTACATAACTGCCCTGAGTCTCTGAGGGAACAGTTACAGGAACAGCTCAAGAGGgaAGCTGAGACTCTTGAAGCAGCGACAAAGCAGTTTGAAGACCTGGAGTTTCAGCAGTTGGAGAGGGAGAGCAGTCTGGAGGAGGAGCGCGAGACCATCAGCCAGCAGCTCATGCAGGACAGAGCTCAATACCACAGCAGTGTCGCCAAGAGAAAGGAAAAGGTGGTGGCATTGGAGAGCCAGGCGAGCCAGCTGGGAATACAGGCCGCTCAGGAGTGTGAGAGACTGGCCAAGGACAGAACCATCACCTTGCAGATGCTacacaagGAAAAGGAAAGGCTGGCCAGTCTGGAGAGAAGATACCAGAGTTTAACTGGTGGAAAGACGTTCCCCAAAAGCTCCAATACTATAAAGGAGGTGTACAGATCTCGACTGGACAGTGATTGCAGCCAATCCTCACTTAGACCGAAAGTCAGCGCCGGTTTGTCTCCTACATACACGACGGCCACGCTGGGACGAAACAGTCCTGCCAGGAGTCCTCTGATGGTGGCCAACAGCACCGGAAGTCTCCCACGCAACCTGGCAGCCACCCTGCAGGACATCGAGACCAAGAGACAGCTGGCTCTTCAGCAGAAAGGTCAGCAGGTTATCGAGGAGCAGCGCAGGCGTCTGGCGGAGCTGAAGCAGAAAGCTGCAGTGGAGGCTCAGTGCCAGTGGGAGGCGCTGCACGGCTCTCAAACGCAGCTCCACCAGCCCTTCTCATCAAGCCCAGCACCGGCGCTTCACCACTCCATCCTGCACCACACAGCGCCCCCTTGCGGAGAGCAGCCGTACGACACGCTAAGCCTGGAGAGCTCGGACAGCATGGACACCAGCATCTCTACTGGAAACAACTCGGCCTGCTCGCCGGACAACATGTCCAGTGCCAGCGGTATGGATGCGTTGAAGATTGAAGAGATGGAGAAGATGTTGAAGGAGGCGCAGCTGGAAAAAGCTCGGCTCATAGAGTCTAGAGAGCGAGAGACTCAGAGCCGTAAACTGATGCTGGAGGAGGAGCGGAGGAGGAGAGAGGAGGCCGAGAAGAGGCTGCAGGAGGAGACGCTGCACAGACAGCAGCTCATCGAGAAGGAGGTCAAGATGAGGGCCAGAAACTTCTCTCAGGCCCGTCCGATGACCCGCTACCTGCCCATCCGCAAAGAGGAGTTTGACCTGCGTTCGCACATCGAGTCTTCAGGCCACAGCGTAGACACCTGCTACCACGTCATCCTCACCGAGAAGATGTGCAAGGGCTTTCTGGTCAAGATGGGAGGCAAGATCAAATCCTGGAAGAAGCGCTGGTTCGTCTTTGATCGCCTCAAAAGGACGTTCTCTTACTACGCCGACAAACACGAGAGCAAGCTGAAGGGTGTGATTTACTTCCAGGCCATCGAGGAGGTTTACTACGATCACCTGCGCAGCGCCACAAAGAAAGGATTTTTCAATCTGAATCTGACAAACAGCCCGACCCCGACGCTGACCTTCTGTGTTAAAACACACGACAGACTGTATTACATGGTGGCTCCGTCCGCAGAGGCCATGAGGATATGGATGGATGTGATTGTGACAGGAGCCGAGGGCTACACACAGTTCATGAACTGAAACAAACCACAAAAGCATTCAGCAGGGAGACCCGCACCTCTTATTCCCAGCGAGAGGAAAAAACTTGATTGTCTAACTTCCCTGTTTCCTGGAGATGTTGTAAACTGGCTCAGCTGCACAGACAGGTATTCACCAGAGGCTTTCCtggatccaaaaaaaaaaaaaagggagacTCACTCGCCATCCAAAATGCCTTTTATTGCCGTTGGAGATATTGTTCAGTTGCAGCCTGGATGTGCAGAAATCTACTTTCATTTCTACCATTTGTTCCATGATATGTTTCCAATGGGGAGAAAAATGCCAAATGACATCAAACCATTCTGGAAAAGCTTCTGCGACAACAATTCGCTGGGATTGACTCTGATGAAATGCTGAAAATTGACACTCGAGAGATGTTTTTAAGTGGAATTTAAAAGAGTATTACATGCACATTTAAAGATCTGGAATCACGAATACTTTTCACCAAAGCTCACCTACCAGCTCAGGAGTGTGTATTTATTGTGGAGGGGCATCAGCCACTCCTGGCCCACCGTTTCCCACTGTGTCTCTGTATTCCCAGCTTTGTTTTCAattcgcatgcacacacacatttaacagtAGAGTCTATTTGCCAAGTCCTGACAACTTGATCTTGCGTTTTGAGGCCATCTCCTATCACTGCCAGCCTACCAGAGTTTGGAAGATTTGCCACAAACAAgaggacaaaacaaacaaacaacatcgGAATCATGCAAGTCATGCAGTGCCTTGAGACTGACCCATATTTCTCACTCGTAGTATTTGAACTGTTACACTAGTGAATAAATGTTGCAGGAA
>TCONS_00017970
AGGAGGCGCAGCTGGAAAAAGCTCGGCTCATAGAGTCTAGAGAGCGAGAGACTCAGAGCCGTAAACTGATGCTGGAGGAGGAGCGGAGGAGGAGAGAGGAGGCCGAGAAGAGGCTGCAGGAGGAGACGCTGCACAGACAGCAGCTCATCGAGAAGGAGGTCAAGATGAGGGCCAGAAACTTCTCTCAGGCCCGTCCGATGACCCGCTACCTGCCCATCCGCAAAGAGGAGTTTGACCTGCGTTCGCACATCGAGTCTTCAGGCCACAGCGTAGACACCTGCTACCACGTCATCCTCACCGAGAAGATGTGCAAGGGCTTTCTGGTCAAGATGGGAGGCAAGATCAAATCCTGGAAGAAGCGCTGGTTCGTCTTTGATCGCCTCAAAAGGACGTTCTCTTACTACGCCGACAAACACGAGAGCAAGCTGAAGGGTGTGATTTACTTCCAGGCCATCGAGGAGGTTTACTACGATCACCTGCGCAGCGCCACAAAGAGCCCGACCCCGACGCTGACCTTCTGTGTTAAAACACACGACAGACTGTATTACATGGTGGCTCCGTCCGCAGAGGCCATGAGGATATGGATGGATGTGATTGTGACAGGAGCCGAGGGCTACACACAGTTCATGAACTGAAACAAACCACAAAAGCATTCAGCAGGGAGACCCGCACCTCTTATTCCCAGCGAGAGGAAAAAACTTGATTGTCTAACTTCCCTGTTTCCTGGAGATGTTGTAAACTGGCTCAGCTGCACAGACAGGTATTCACCAGAGGCTTTCCtggatccaaaaaaaaaaaaaa
>TCONS_00017971
GGAGATGACTTTTGTCCAGTGCTGACCAGGAGAATCTGCTTTGTGTCTGAGCGATCACACACAGCATCTCTATTCCATTCTCAAAGCTCTTTCCAGCTTCATAATGTCTTGTCCATGAGGAGCCATGTTGAGGGTCTTGTTTCATTGGCTGCCAGAAAGTTATTGCAGGATTCTCATGTCCCCGAGCAAGTAAGTGACAGTACACTGGCCATGGATACTTTGAACCAAAATCTTAGCCATGGGCATCAGTCTCATCAGGTGCTCCAGACCATCAGCCAGCAGCTCATGCAGGACAGAGCTCAATACCACAGCAGTGTCGCCAAGAGAAAGGAAAAGGTGGTGGCATTGGAGAGCCAGGCGAGCCAGCTGGGAATACAGGCCGCTCAGGAGTGTGAGAGACTGGCCAAGGACAGAACCATCACCTTGCAGATGCTacacaagGAAAAGGAAAGGCTGGCCAGTCTGGAGAGAAGATACCAGAGTTTAACTGGTGGAAAGACGTTCCCCAAAAGCTCCAATACTATAAAGGAGGTGTACAGATCTCGACTGGACAGTGATTGCAGCCAATCCTCACTTAGACCGAAAGTCAGCGCCGGTTTGTCTCCTACATACACGACGGCCACGCTGGGACGAAACAGTCCTGCCAGGAGTCCTCTGATGGTGGCCAACAGCACCGGAAGTCTCCCACGCAACCTGGCAGCCACCCTGCAGGACATCGAGACCAAGAGACAGCTGGCTCTTCAGCAGAAAGGTAACAAGAGACACGGATCAGAA
>TCONS_00017972
gGAGAGTGACTCAATGAGGAAACATCTGAGAGAACCACAGGACTCCAACTAGCTTGCGACTTTTAGCACGTCACAATGAGGGAACGGCAGCGGCTGGAGACAATCTTGAACCTCTGCGCTGAGTATAACAAGGGCGACGGGCCGCCGGGTGATTTGGGCAGGATGGGCGTCTCTGGGCTTGGCTCGAGGGACGGGCTTAACGTCAGGCGTCCTTCAATGGACAGCGTGAACAGCGCTTCACTAAGAGCGACTCAAAGACAACGGGAAAGCCAAGAGGACAACCTGAAGGAGGATAGCAGTAGCACTGAGAGTGCGCAGCTGGACGGACGGACACCTGCTCTGCTAAATGGACAGAATGGACAGGCTGAGGAGTCTCTGGGTTCGGGCAGCATTGGCCGTCTGGAGCTGGGCTACCTGGAGGAGGAGCGGGTTCGAGTGCTGGCAAAGGTAGATGAGCTCAAAGCTCGAATCACAGAACTGGAGCAGCAACTTCAGGAGTCTAAACAAGAGGCGGAGATGGAGAGAGCTCTGCTGCAGGGAGAAAGACAGGCTGAGATGGAGCAAATCGAGACTGAGACCGAGATTATCAACCAGCTGCAGCGCAAACTCACTGAACTGGAGAGCAGCATCCAGAGAGAGAAGGACAAGgaAGCTGAGACTCTTGAAGCAGCGACAAAGCAGTTTGAAGACCTG
>TCONS_00017973
TAGCGGCGCCAGGCTCTCCAAAGCCCGGCTGGAATATCTCATCTGCGGCGCTTTATACTACAGCCTGGGCACCCCTGTGGCCGGTACAGCTGGCCTAGACGAAGAACCGGAATGCGGGAGCCGTACTTTTGTATTTGAGCTCGGCTATGGCTTAATAACCAAACGCAGCGGTTTAGCGTTCCCTCAGGCGTGTTCTCATCTATTCAGAGAACCTGGTCAATGGGAACCACTCTTCAGGAGAGGCAAAATCCCACTTGGTTTCCAACGAGAGAGTGCGCCCTGAGCACAGTGCCATCGTCAGTTCCATTGAGAAGGACCTTCAGGACATTATGGACTCATTAGTCATGGATGACCCTCAGCCCTCATCCTCCGAGTCAAAGAAGCCCTCTAGTCAGTCCATCTCACAGTCTCCCCTTTCTCCGATGTTAAATGGAGGGGGGCGCTTCCTTCTCTCTCCCCCAACGAGCCCTGGTGCTATGTCTGTGGGCTCCAGTTATGAGAATAACTCCCCTCCTTTCTCTCCTCTGTCATCTCCCTCGGCTGCCAGCAGTGGCAGCTACACCACTCTCTCACCAATTGGTTGTCAGGACCAGCCTCACATGCTTCCTCCTGTGCCAGTGAGGTCTTCTAGTTACAATTATACCAGCCAGCCACCCATACCTCAGCCACGGACCATACTGCCCAGCTATTCCAGTGGCAGCAGTGGGCCAAAGGTGCCTGAGAGTCCCAGACTCCAGCG

Function

symbol description
phldb1b Predicted to be involved in regulation of microtubule cytoskeleton organization. Predicted to be active in basal cortex. Orthologous to human PHLDB1 (pleckstrin homology like domain family B member 1).

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0045180 basal cortex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121114-8 Predicted to be involved in regulation of microtubule cytoskeleton organization. Predicted to be active in basal cortex. Orthologous to human PHLDB1 (pleckstrin homology like domain family B member 1).

Ensembl:

ensembl_id ENSDARG00000079378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017969 False 5369 mRNA 0.53 22 17948397 18067220
TCONS_00017970 False 801 mRNA 0.53 5 17949047 17960228
TCONS_00017971 False 774 mRNA 0.52 7 17969990 18091157
TCONS_00017972 False 693 processed_transcript 0.55 5 17983565 18002215
TCONS_00017973 True 739 processed_transcript 0.55 2 18020545 18023109

Neighbor

gene id symbol gene type direction distance location
XLOC_009127 BX901923.1 coding downstream 78307 17844191 ~ 17870090 (-)
XLOC_009126 CT573342.2 coding downstream 134717 17788715 ~ 17813680 (-)
XLOC_009125 NA coding downstream 193471 17751150 ~ 17754926 (-)
XLOC_009124 adamts15b coding downstream 329091 17603488 ~ 17619306 (-)
XLOC_009123 tubd1 coding downstream 542341 17397321 ~ 17406056 (-)
XLOC_009129 arcn1b coding upstream 11123 18102280 ~ 18115624 (-)
XLOC_009130 cryaba coding upstream 28461 18119618 ~ 18124678 (-)
XLOC_009131 CR385077.1 coding upstream 46584 18137741 ~ 18138607 (-)
XLOC_009132 CR388163.2 coding upstream 60508 18151665 ~ 18151780 (-)
XLOC_009133 pih1d2 coding upstream 66508 18157665 ~ 18162647 (-)
XLOC_009122 CR848791.2 non-coding downstream 565815 17379512 ~ 17382582 (-)
XLOC_009121 NA non-coding downstream 663254 17279553 ~ 17285143 (-)
XLOC_009120 NA non-coding downstream 696346 17234865 ~ 17252051 (-)
XLOC_009135 CR388163.1 non-coding upstream 86784 18177941 ~ 18180824 (-)
XLOC_009145 AL845312.1 non-coding upstream 1003354 19094511 ~ 19095107 (-)
XLOC_009147 NA non-coding upstream 1194007 19285164 ~ 19286600 (-)
XLOC_009150 BX324206.1 non-coding upstream 1266113 19357270 ~ 19357389 (-)

Expression


Co-expression Network