Fish Transcriptome and Expression Database

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model fish

XLOC_009132 (CR388163.2)

Basic Information

Item	Value
gene id	XLOC_009132
gene name	CR388163.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007126.7
NCBI id	CM002899.2
chromosome length	48040578
location	18151665 ~ 18151780 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017978
TAGATCTGAAACATCACTCTGCTGCTCTATGTGGTTgaccactgaagctaagcagggttgatcctggtcagtacctggacaggagaccacatgggaaaaccatGTTGCTGCTGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108515

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00017978	True	116	rRNA	0.49	1	18151665	18151780

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_009131	CR385077.1	coding	downstream	13058	18137741 ~ 18138607 (-)
XLOC_009130	cryaba	coding	downstream	26987	18119618 ~ 18124678 (-)
XLOC_009129	arcn1b	coding	downstream	36041	18102280 ~ 18115624 (-)
XLOC_009128	phldb1b	coding	downstream	60508	17948397 ~ 18091157 (-)
XLOC_009127	BX901923.1	coding	downstream	281575	17844191 ~ 17870090 (-)
XLOC_009133	pih1d2	coding	upstream	5885	18157665 ~ 18162647 (-)
XLOC_009134	tmprss5	coding	upstream	12274	18164054 ~ 18177124 (-)
XLOC_009135	CR388163.1	coding	upstream	26161	18177941 ~ 18180824 (-)
XLOC_009136	btr04	coding	upstream	37865	18189645 ~ 18200358 (-)
XLOC_009137	btr16	coding	upstream	47098	18198878 ~ 18209723 (-)
XLOC_009125	NA	non-coding	downstream	396739	17751150 ~ 17754926 (-)
XLOC_009122	CR848791.2	non-coding	downstream	769083	17379512 ~ 17382582 (-)
XLOC_009121	NA	non-coding	downstream	866522	17279553 ~ 17285143 (-)
XLOC_009120	NA	non-coding	downstream	899614	17234865 ~ 17252051 (-)
XLOC_009145	AL845312.1	non-coding	upstream	942731	19094511 ~ 19095107 (-)
XLOC_009147	NA	non-coding	upstream	1133384	19285164 ~ 19286600 (-)
XLOC_009150	BX324206.1	non-coding	upstream	1205490	19357270 ~ 19357389 (-)
XLOC_009151	BX324151.1	non-coding	upstream	1391040	19542820 ~ 19542934 (-)

Expression

Co-expression Network