RNA id: TCONS_00017960


Basic Information

Item Value
RNA id TCONS_00017960
length 2891
RNA type mRNA
GC content 0.42
exon number 8
gene id XLOC_009123
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17397321 ~ 17406056 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTACTGTCAGATGTTCAGCTTCTACTTCATAAAAGTCTGAAGCAGTAACGTTAGAAACGTAAAGTTATTTGATATTGTTTATGTCTTAGGGTTGTTCTGTCTCTCCTTACATTAATGTCACCTCGTTAATTTAAGTTAAACCTAGTTTAACTTAACGTTATATTAACTTTATACACAATGCTATGCTGTCGCGATGTTTAATTGCTGAGATATGTCGGTTGTAAGCTTACAGTTAGGTCAGTGTGGAAACCAAATAGGACACGAGCTATTCAGTGTCATAAGCGATGATTCTAATGGACCAAACAGAAAGAAGTACAAGCAATGCAGCGACGAGAGATTCTTCTATCAAAACTCCGCTGGAGAGCTCGTGGCACGGTCAGTACTTGTTGATATGGAGCCCAAAGTTATCTCACAGGCCCTAGCCAAGGCTTCAAAATCTGGAAGATGGAGATATGGAGACAAAGCACATTTCTCCCAGAAGCAGGGCTCTGGAAACAACTGGGCTAATGGGTTCTGTGTTCATGGTCCTCGTCACAAGGAGGATGTGGAGGATCTAGTGCGGATGGAGGTGGAGCGCTGTGATCGTCTGGCCGGGATCTTCACCATGATGAGTGTTGCAGGCGGCACTGGCTCTGGTGTGGGCACCTACATCACTCAACGTCTGAGGGATCTTTACCCACAGTCCTTCATCTTAAATCAAGTGACCTGGCCGTATGGAGCTGGTGAGGTGATTGTGCAAAACTACAACTCTGTTCTGACTCTGTCCCATCTCTACCAGCTCTCTGATGCTATTCTGGTTCATGAGAATGACACGGTGCACAAAATCTGCAGCCAGCTGATGAACATCAAGCACATCTCCATCAGTGACATAAATAAAGTTATCTCTCACCAACTGGCCAGCGTCCTTCAGCCCGTTTACACCGCTCATTCACCCGACTATTACAGCAGGAACCCCATAGGGGAATTGCTTACCTCCTTGGTGTGTCACCCAGAGTACAAACTGCTCAGCTTGTGTAACATTCCTCAAATGTCTAGCACGTCACTGGCCTATAGTGTGTTTAACTGGCCTGGTTTGCTCAAGCATCTGCGTCAGATGCTAATTGCTAGTGCTAGGATGGAGGAAGGGATTGACTGGACGGTGAATGTCCCATCAGTGGTCCTATCTGGAGCAGAGAGTGTGACAAACATCAGGCATAAAAGTTTCAATTCGTCACTGGCTAATCTTTTAATACTTAGAGGGAAAGACGTGTCTACTGCAGTTACAGATGGATTTAAGGATCCCTTGTTATATGTGCCGTGGCTTAAAGCAGAGAATAGTTTCAGCACATGGAGCTCGCCTATACCGTTCAATGGATATGAGAAGTCGGCCACTTTGGTCAGTAACAGCCAGTCGCTTCTGAAACCCCTGGACAATATAGTTAGAAAGGCTTGGAACATGTTTGCTTCAAGGGCCTATATTCACCAGTATACAAAGTTTGGAATCTCGGAGGAGGATTTTCTGGACAGTTTTACGGCACTAGAACAGATCATCTCCAGCTACACACATCTTTGACATCATAAAGACTGAAAAAGCTACTTTTGCATGATGCCAAATGAGTGGCCTCTGCAGCAgttgtatttataattataagATGGGTAAATTCATCTTTTTGTGTTaagatatttattttgttgttaaaaattaTACATTCGAATGGAAATGAAATCAGCAAAGTAATTATGATTTCTGTTCACTTCCCCCACCCCCAGACATGCACAAATGCTCATTGTGCATCATGTCCGCAGTGGTGAGGCTAAACATCCTCGCTCAGTCAAATAAGTTaggaaaatgattttattttgggagagaaaaaaaaaatactgcatgTTAAATGGGACGAGTGTAAGGCgtatgaacatgatttaatacTAGAGTACCCGCGGGGTCCTAAAAGCATTGAAATAGTCTTAAATTTGATCATCTCAAATTAAGGCCTTGAATATGGTTTACAAAGTCCTTAATTTCATTAAAAAggtcttattttattcatttatttttgcctttcctaGGATTAAGTACATACCATAACAAAATGAACTGTTACTAATGTAGGCTAATTAAAAATTCATGCACGTCATAGCAGAAAGTGCGAAAGCGTGAGCACCCGTTACTATGGTTACTAGACAAGTGAGGTACAGAACAAGATTGTTGCTAGCCTAGTTTGTCAGCTAAAATGGGAAAGTGTCGGTTTTATCTGTTGTGGCCAAGAAATCCAAATTACGTTTAAGTCAAGCCTGTGACTGGAAATGACCACAACGCCTACTGCTGTTGGTGCCAGAAATCTTTTAAGCTAGCGACGATGTGGGCTCTAGACTCCCATATGAGGAGTGCCAAACACACCGTGTGTAGTACTGCTCGTCAGCTCCAGCCAGCTATTGTGCAGTTCTGTGCACCGGAGACCTCTTCGATTACTGAAACAGGTTGGCTATCAGTAATGAAGAAATTTCTACATTGGAAGCATTGCCACCACAGCCAAGGAACATCCTATCCTTACTGTGGCTTAACAACAACTTTGCGGGCAGAGGTGATGTAGGTCTTTAAAACAATCTCTGAGCACCACTCTTACACATCGAATGAGAACTTCAAAACCATGTTTGCTGACTCTGAGGTTGCAGCTACATTCTCATGTGGAAGCAACAAAACTGCATATATTACTAAATTTGTATCAGCTCCTTTTATAACTAAAGAACTGACTGACCAGGTAAATAAGGCCAATGGGATTGTGGTCATGTTTGACAAGAGTCTCAATAAGATGACGAAAAGTAAGCAGTTGGACCTTCATATTCGCTACAGGGTGGACGACGATTGAATATAACTgatagttaaaataaaatgtattatttaattcca

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-73 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within cell projection organization and microtubule-based process. Predicted to be located in centriole; cilium; and nucleus. Predicted to be active in cytoplasm and microtubule. Orthologous to human TUBD1 (tubulin delta 1).

Ensembl:

ensembl_id ENSDART00000146735

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017955 lncRNA downstream 14739 17379665 ~ 17382582 (-) False XLOC_009122
TCONS_00017956 lncRNA downstream 14755 17379788 ~ 17382566 (-) False XLOC_009122
TCONS_00017954 lncRNA downstream 14827 17379550 ~ 17382494 (-) False XLOC_009122
TCONS_00017959 lncRNA downstream 14827 17380525 ~ 17382494 (-) True XLOC_009122
TCONS_00017958 lncRNA downstream 14834 17379834 ~ 17382487 (-) False XLOC_009122
TCONS_00017963 lncRNA upstream 345094 17751150 ~ 17754867 (-) False XLOC_009125
TCONS_00019141 lncRNA upstream 345094 17751150 ~ 17754926 (-) True XLOC_009125
TCONS_00017965 lncRNA upstream 438135 17844191 ~ 17865563 (-) False XLOC_009127
TCONS_00017982 lncRNA upstream 760725 18166781 ~ 18169348 (-) True XLOC_009134
TCONS_00019142 lncRNA upstream 1879108 19285164 ~ 19286600 (-) True XLOC_009147
TCONS_00017950 mRNA downstream 183598 17196527 ~ 17213723 (-) True XLOC_009118
TCONS_00017949 mRNA downstream 206781 17177635 ~ 17190540 (-) True XLOC_009117
TCONS_00017948 mRNA downstream 227386 17147002 ~ 17169935 (-) True XLOC_009116
TCONS_00017947 mRNA downstream 258681 17128282 ~ 17138640 (-) True XLOC_009115
TCONS_00017946 mRNA downstream 297761 17098351 ~ 17099560 (-) True XLOC_009113
TCONS_00017961 mRNA upstream 197432 17603488 ~ 17618800 (-) False XLOC_009124
TCONS_00017962 mRNA upstream 202489 17608545 ~ 17619306 (-) True XLOC_009124
TCONS_00017964 mRNA upstream 382659 17788715 ~ 17813680 (-) True XLOC_009126
TCONS_00017966 mRNA upstream 456151 17862207 ~ 17869115 (-) False XLOC_009127
TCONS_00017967 mRNA upstream 460004 17866060 ~ 17870090 (-) False XLOC_009127
TCONS_00017944 other downstream 326075 17061577 ~ 17071246 (-) False XLOC_009112
TCONS_00017936 other downstream 524721 16794111 ~ 16872600 (-) True XLOC_009108
TCONS_00017917 other downstream 1436853 15959376 ~ 15960468 (-) True XLOC_009094
TCONS_00017896 other downstream 2013338 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017891 other downstream 2172619 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017972 other upstream 577509 17983565 ~ 18002215 (-) False XLOC_009128
TCONS_00017973 other upstream 614489 18020545 ~ 18023109 (-) True XLOC_009128
TCONS_00017978 other upstream 745609 18151665 ~ 18151780 (-) True XLOC_009132
TCONS_00017983 other upstream 771885 18177941 ~ 18180824 (-) True XLOC_009135
TCONS_00018000 other upstream 1688455 19094511 ~ 19095107 (-) True XLOC_009145

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000053_01972623_01978167.mRNA True 1624 mRNA 0.42 7 CI01000053 1972623 ~ 1978639 (+)