RNA id: TCONS_00017961


Basic Information

Item Value
RNA id TCONS_00017961
length 3327
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_009124
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17603488 ~ 17619306 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGTGTTCAACATGAACCATGAGCTCTCATCAGAACCTCCCAAAAGCTCTTATCACAATCTGCAATGATTAcatgtgaagtaaaaaaaaaaaaagagtgtgctGGTTTCACAGAGGATGGCGATTAGCTTAATTCTCTTGACGGATTTACAGAACCGTGATCAAGAGCATCACGGTGTGAATTAAGCTTTAAGGGGATATTTCACCACCAACAATGATGTCGGTTTTCCccgttttgttttgtcttttgcaTGTGCTGATTTTAACGAAAAGATACCTCTGTGTGGAAACTGATTTTTGTGAACCTGTTCGACTTGACCGTGAAAATGTCCCAAGTTTTGACAAACCGAGCAAAGAACTTGTTGTTTACCGAATAAACGCGTTTAATCAGGAATTCTATCTTACTCTTTTACCTGACTCCAGTTTCCTTGCTCCTGACGACACATTTCAAGACACCTCATCTCCAAGCGCGCTTTCGGGAGATGAATTGAGAAGATGCTTCTACTCTGGTGATATCAACGCAGACATGAATTCATATGCAGCTCTCAGTCTGTGTGGAGGTGTCCGAGGAGCGTTTTCTTATAACGGGATGGAGTACATCATTGAGCGCAGGACAGCACCAGAACTGATCTCAGATGATGCTGGAAAAACGCACGTCATCCGCAGGAAAAATCTTAACGCTCCAAACTTATCCAAGTGCGGAGTGACATCAAACCAGGAGGTTGTGGAGTCCTTAGATAAGTACAAACATCTGAAAGGGCACACGAAGAACTTGACAGAAACTTTGCTGAGAAGCATGAGCAGGTCGAAAAGATTCGCCTCTATCCCGAGATACGTGGAGGTGCTGGTTGTTGCTGATGAGTCAATGGCAAAATTTCATGGTGACGACCTGAAGCATTACCTTCTGACTCTTTTGTCCGTCACTGCAAAGCTGTACAAACACCCCAGTATCTTGAATGCCATCAGTATAGTGGTTGTAAAGCTTATAGTGATTAATGAGGCAGAAAAGGGACCCAAAGTATCCAGTAACGCAGCACTAACCCTGCGCAATTTCTGCACCTGGCAGAAGAAGCTCAACAAAGTCAACGACAAACACCCTGAGTACTGGGACACGGCTATTCTGTTTACAAAGCAGGACCTGTGTGGGGCCACTACGTGTGACACTCTTGGTATGGCTGACGTGGGCACCATGTGTGATCCTAAGAGAAGCTGCTCGGTTATTGAAGATGATGGCCTCCCTTCAGCCTTCACCACCGCACATGAACTAGGTCATGTCTTCAGCATGCCACATGACAATGTGAAGGCCTGTGAGGATGTGTTTGGAAAGCTGAAGGACAATCATATGATGTCTCCAACACTGATCCAGATTGACCACCACACGCCCTGGTCTGTGTGCAGCGCTGCTATCATCACTGACTTCCTGGACTCTGGCCATGGCGACTGTCTTCTGGATCAGCCCCAGAAGCTCATGGCTCTTCCAGAAGACCCACCAGGCATCAGCTACTCTCTCGGCCGTCAGTGTGAGCTGGCATTTGGCTCCGGATCCAAGCCCTGTCCCTACATGCAGGCCTGCTCCAAACTGTGGTGTACTGGGAAGGCTAAAGGTCAACTAGTTTGCCAGACGCGCCACTTTCCCTGGGCTGATGGCACTGCCTGTGGAACCAACAAGTTGTGCTACAGGGGGACTTGCACTGAAAAGCAAAATACCTTCAAAAACAAGGTAGATGGTCGTTGGGGTCGATGGGGTCTGTATGGCCCATGTTCCCGTTCATGTGGAGGAGGAGTGCAGCTTGCCAAACGTGACTGTAACAATCCTGTGCCTGAAAATGGGGGCAAGTATTGCCAAGGCCTGAGAGTGAAGCATCGCTCCTGCAACTTAGAGCCTTGTAAAGACTCAGGAAAAACGTTTCGGGAGGAGCAGTGTGAGATGTTTAATGGCTTTACACTGAACACTAACAGACTGAGTCCATCTGTGGTTTGGGTCCCAAAGTACTCGGGAGTCTCTGTTAAAGACAGATGTAAGCTCATCTGCAGAGCCAACGGCACCGGATACTTCTACGTCCTTGCGCCAAAGGTGGTGGATGGGACTCCTTGTTCTCCTGATACCTCAGCTGTCTGTGTTCAGGGAAAGTGCATCAAGGCTGGCTGTGATGGAAAACTGAACTCCAACATGAAGTTTGACAAGTGTGGTGTGTGTGgaggtgaaaacaaaaactgcaagaaagtCTCTGGAATGTTCACAAAACCCATACATGGATATAACTTTGTCATCGATCTACCTATTGGAGCTGCAAATGTGGATGTAAGGCAGCGTGGTTACCGTGGTTTGGTGAACGATGACAACTATCTAGCAGTAAAGAACCATCACGGCAAATATCTCCTGAACGGAAACTTTGTGGTTTCGGCAGTAGAAAAAGACATCATTGTGAAGGGGAGTCTGCTGCGCTACAGTGGAACCGGCACGTCAGTGGAGACACTGCAGACCTCAAGACCTCTTAAAGAGTCCCTGACGGTGGAGCTGCTGTCTGTGGGTAAAATGACACCTCCTCGTGTGCGATACTCCTACTACCAGACTGTGGGGAATAAGGAGAGCAAGATCTTCAAGAAAGAGGAGAGGATCCCTGCGGAGAACAGCGTGCTGGAAGACAGCAATAAAGTAGAACTGAAGAAGCCAGTCTATCAGACACCATCTTATAAGTGGGTCACGGCGGACTGGAGTAAGTGCTCGGTTAGCTGTGGGAATGGAGTCCAAAGTAGACTCATACAGTGTTTGGGGTCAGATGGGAAAATGGCCACAAATTGTGATGGATCCCAGAAGCCCAGTTCCATGAAGGTGTGTGGTGATCCATGCCCAACATGGAGCATCGGCGAATGGTCCTCATGCTCTAAAACCTGCGGGAAAGGCTTTAAGAGACGCCCACTGCGGTGCATGACTCAGACAGGACAGTTTTTACCTAGAGACCATTGCTCAGGCAAGAAAAAGCCACAGGAACTTGACTTTTGCACTGTTCGGTCCTGCTAGTgactgttcaggtgtgttttaggACCCATTTTCTTAGCCCAGACTCTGTGGAACTACACGACTACATTTCTGCAAATCCTGAAATAATTTGCTAAAGGTACATTTGCTACACTTTACAGATGACATGCCCACAACAGGCGCTATAAGCTGAATAAATGATACCCTATTTTGAAGTTTATTAAACAGCACAGTTCAGTGAaaatcaaaaatgttattttattttctcaaatcTAGTTAAATTTCTTAAGTTGCTATTATGCAAAATTCACTTTTAttaggggtttaaacagttgcgtgacaacagt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157185

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017955 lncRNA downstream 220906 17379665 ~ 17382582 (-) False XLOC_009122
TCONS_00017956 lncRNA downstream 220922 17379788 ~ 17382566 (-) False XLOC_009122
TCONS_00017954 lncRNA downstream 220994 17379550 ~ 17382494 (-) False XLOC_009122
TCONS_00017959 lncRNA downstream 220994 17380525 ~ 17382494 (-) True XLOC_009122
TCONS_00017958 lncRNA downstream 221001 17379834 ~ 17382487 (-) False XLOC_009122
TCONS_00017963 lncRNA upstream 132350 17751150 ~ 17754867 (-) False XLOC_009125
TCONS_00019141 lncRNA upstream 132350 17751150 ~ 17754926 (-) True XLOC_009125
TCONS_00017965 lncRNA upstream 225391 17844191 ~ 17865563 (-) False XLOC_009127
TCONS_00017982 lncRNA upstream 547981 18166781 ~ 18169348 (-) True XLOC_009134
TCONS_00019142 lncRNA upstream 1666364 19285164 ~ 19286600 (-) True XLOC_009147
TCONS_00017960 mRNA downstream 197432 17397321 ~ 17406056 (-) True XLOC_009123
TCONS_00017950 mRNA downstream 389765 17196527 ~ 17213723 (-) True XLOC_009118
TCONS_00017949 mRNA downstream 412948 17177635 ~ 17190540 (-) True XLOC_009117
TCONS_00017948 mRNA downstream 433553 17147002 ~ 17169935 (-) True XLOC_009116
TCONS_00017947 mRNA downstream 464848 17128282 ~ 17138640 (-) True XLOC_009115
TCONS_00017964 mRNA upstream 169915 17788715 ~ 17813680 (-) True XLOC_009126
TCONS_00017966 mRNA upstream 243407 17862207 ~ 17869115 (-) False XLOC_009127
TCONS_00017967 mRNA upstream 247260 17866060 ~ 17870090 (-) False XLOC_009127
TCONS_00017968 mRNA upstream 249492 17868292 ~ 17868870 (-) True XLOC_009127
TCONS_00017969 mRNA upstream 329597 17948397 ~ 18067220 (-) False XLOC_009128
TCONS_00017944 other downstream 532242 17061577 ~ 17071246 (-) False XLOC_009112
TCONS_00017936 other downstream 730888 16794111 ~ 16872600 (-) True XLOC_009108
TCONS_00017917 other downstream 1643020 15959376 ~ 15960468 (-) True XLOC_009094
TCONS_00017896 other downstream 2219505 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017891 other downstream 2378786 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017972 other upstream 364765 17983565 ~ 18002215 (-) False XLOC_009128
TCONS_00017973 other upstream 401745 18020545 ~ 18023109 (-) True XLOC_009128
TCONS_00017978 other upstream 532865 18151665 ~ 18151780 (-) True XLOC_009132
TCONS_00017983 other upstream 559141 18177941 ~ 18180824 (-) True XLOC_009135
TCONS_00018000 other upstream 1475711 19094511 ~ 19095107 (-) True XLOC_009145

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000053_01860130_01870321.mRNA True 3107 mRNA 0.48 8 CI01000053 1859970 ~ 1870436 (+)