RNA id: TCONS_00017884


Basic Information

Item Value
RNA id TCONS_00017884
length 1737
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_009077
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14674928 ~ 14755318 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaaggtaatgagttaattatgtACCTTATTACTTAATACCCaccctctctgtctctctctatctctctctcactcacacacacacacacacacacacacatcaatgctGATGGCTCATCGTGGGCTGTGCGGGTTTTTTCATGTCCTGttttatacttACTTAATATGCCGGACGAATCATTCGGCGAGATGTTCACTTCGATGTTGAGCGTGAATCAGGCTGTTTCTGCAGAAAGAAAACTCATCGATCACTTAATAATATACATTGAACACGAGGCACAAAGACTGGAAGATATTAAACGGTTCTTTTCGAGAGTCACATCATTGCATGATGGGATATACAACGAGCCATCAGATCCCATAGCCAATCCAATTGCTGCATTTAAACTGGTCAAAAGACTTAAATCCGAATGGTTGAATGTTGTCCATAGCACTGAAGCTGAAGAAAACATTAAAGtCCTTAGGGAGGACTACAGGAGGATGGAAAGCAGTTTGCCCAAACTGGAGGACCTTCGGGGGGCAGCGCATGGGCTGATGAGACTTCAGGATGTGTACAATCTGCACGTAGAGAGCCTTGTGCGAGGTCACTTCCAGCAAATATCTGATCCTGTTGACTTTTACAAACTCTCTGTGTCCGATATGCTCTCCGGGGATGATTGCTTTCTTGTTGGAAAGGTGGCCTATGATTTGGAAGATTACTACCATTCTGTGCTGTGGTTTGAGGAGGCCGTTCGACTCTTCCGAGGAACCGAATGGAGTCCAGAAAATGAAGGCACGCTTGAAGATGCCCTGGACCATTTGGCTTTCTCTCATTTCAAGacagGAAACATATCCCACGCCCTCAGTCTCTCCCGGGAACTATTGCTTCATGatCCCATGAACAGAAGGGTACACTTCAATGTGGAGAAGTACGAGAAACTCCTAAATGAAAATCTACCTGCTACTAGCAGTGGTTTGACTTTGAAAAGGCCCGACGGCATTTATTTGAGAACCAGGAATGCCTATGAACAGCTCTGCCAAACCAAAGGATCTCAGcCAAAGCATTTTGAGAATCCCAGTTTGTTCTGTGACTATTTCACCAACGGCAGCCCTGCTCTATTTCTGCAGCCAATCAGACGAGAGATAATCAGCCTGCAGCCCTATGTGGTGCTCTTCCATGGCTTCGTCACCCAAGCTGAAGCCAAAAACATCAGAAAATATGCAATGCCAGGGCTCAGAAGATCAGTGGTGGCATCAGGCATGAATCAGGCCACTGCTGAATATCGCATCAGCAAGAGCGCATGGCTGAAAGAGTCGGCCCACGAGGTTGTGGGTAAGCTGGATCAACGCATCACCTTGGTAACTGGACTGAATGTGCAGCCTCCTTATGCCGAATATCTCCAGGTTGTAAATTATGGGATTGGAGGACACTATGAACCTCATTTCGATCATGCCACAtccgACTCTAGTCCATTGTACAGACTAAAAACTGGAAATCGAGTGGCTACAATCATGATATATctgAGCCCTGTGCAAGCTGGAGGATCCACAGCCTTTATCTACGCCAACTTCAGTGTTCCTGTTGTGCAGAATGCTGCTCTCTTCTGGTGGAACCTGCATAAAAATGGCCAAGGAAATGTTGATACTCTTCATGCTGGCTGTCCTGTTATTGTTGGCAATAAATGGgTTGCCAATAAGTGGGTTCATGAGTATGAACAAGAGTTCAGACGTCGATGTAGCCTTAATCCCGAGGAGTGA

Function

GO:

id name namespace
GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-4 Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in endoplasmic reticulum lumen and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including alar plate midbrain region; muscle; optic tectum; retina; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDART00000160302

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017870 lncRNA downstream 428073 14246090 ~ 14248047 (-) True XLOC_009069
TCONS_00019132 lncRNA downstream 444050 14229248 ~ 14232070 (-) True XLOC_009068
TCONS_00019131 lncRNA downstream 611770 14062613 ~ 14064350 (-) True XLOC_009063
TCONS_00017856 lncRNA downstream 611818 14062613 ~ 14064302 (-) False XLOC_009063
TCONS_00019130 lncRNA downstream 1467708 13206623 ~ 13208412 (-) True XLOC_009060
TCONS_00017888 lncRNA upstream 127973 14883291 ~ 14884061 (-) True XLOC_009080
TCONS_00019133 lncRNA upstream 272894 15028212 ~ 15030391 (-) True XLOC_009081
TCONS_00017892 lncRNA upstream 469013 15224331 ~ 15227050 (-) True XLOC_009082
TCONS_00018816 lncRNA upstream 548409 15303727 ~ 15307733 (-) False XLOC_009083
TCONS_00018817 lncRNA upstream 548409 15303727 ~ 15307751 (-) False XLOC_009083
TCONS_00017881 mRNA downstream 33934 14630690 ~ 14642186 (-) True XLOC_009075
TCONS_00017880 mRNA downstream 50747 14602520 ~ 14625373 (-) True XLOC_009074
TCONS_00017879 mRNA downstream 86443 14554298 ~ 14589677 (-) True XLOC_009073
TCONS_00017878 mRNA downstream 189586 14436613 ~ 14486534 (-) True XLOC_009072
TCONS_00017877 mRNA downstream 206416 14436613 ~ 14469704 (-) False XLOC_009072
TCONS_00017886 mRNA upstream 21536 14776854 ~ 14780602 (-) True XLOC_009078
TCONS_00017887 mRNA upstream 120408 14875726 ~ 14884332 (-) True XLOC_009079
TCONS_00017889 mRNA upstream 465805 15221123 ~ 15230264 (-) False XLOC_009082
TCONS_00017890 mRNA upstream 466103 15221421 ~ 15227541 (-) False XLOC_009082
TCONS_00017894 mRNA upstream 593172 15348490 ~ 15357178 (-) True XLOC_009084
TCONS_00017882 other downstream 40335 14635669 ~ 14635785 (-) True XLOC_009076
TCONS_00017874 other downstream 360650 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017866 other downstream 482224 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017858 other downstream 593007 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017854 other downstream 851516 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017891 other upstream 466165 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017896 other upstream 628580 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017917 other upstream 1204058 15959376 ~ 15960468 (-) True XLOC_009094
TCONS_00017936 other upstream 2038793 16794111 ~ 16872600 (-) True XLOC_009108
TCONS_00017944 other upstream 2306259 17061577 ~ 17071246 (-) False XLOC_009112

Expression Profile

//