RNA id: TCONS_00017888


Basic Information

Item Value
RNA id TCONS_00017888
length 471
lncRNA type sense_intronic
GC content 0.36
exon number 2
gene id XLOC_009080
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14883291 ~ 14884061 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAATATATTAAAGATTCTTTTTAGCAAGAATGTAGTTATGTAGACttgatatataatgttttttaatgaagTAAATGGCTATTTTCAAGAGAATAAGCATTTTCTTTGATGTGACGACAGTGTCCGTGATCCGCCATTCCAAACGAAAAAAGCTTCGTTGCTAACGTTAGCTCAGTCCTTTGTGAATTTACCGTGGCTTTTACTGTGGTTAACATTAAGCATGCGTTTAGATAGTTGTGAACGGACAGTACCATACTGATTTTGTTATAGAACGATTTGGTCTGGCGTTAGGGCACTACTGACtgtcttaagcagGTTGTCGAATGTGTGCCCATACTGGCGTAACATTAACTTTTAACGTAAAGGGCGTCCATTTatagttctttatttttttacgtGAGATGCTGTAATTATGTCTTTGGGGTTATAATGCACTTAATAGGCTAACTTATATTCACAGCAAGTGTTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171435

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017885 lncRNA downstream 186516 14680055 ~ 14696775 (-) True XLOC_009077
TCONS_00017870 lncRNA downstream 635244 14246090 ~ 14248047 (-) True XLOC_009069
TCONS_00019132 lncRNA downstream 651221 14229248 ~ 14232070 (-) True XLOC_009068
TCONS_00019131 lncRNA downstream 818941 14062613 ~ 14064350 (-) True XLOC_009063
TCONS_00017856 lncRNA downstream 818989 14062613 ~ 14064302 (-) False XLOC_009063
TCONS_00019133 lncRNA upstream 144151 15028212 ~ 15030391 (-) True XLOC_009081
TCONS_00017892 lncRNA upstream 340270 15224331 ~ 15227050 (-) True XLOC_009082
TCONS_00018816 lncRNA upstream 419666 15303727 ~ 15307733 (-) False XLOC_009083
TCONS_00018817 lncRNA upstream 419666 15303727 ~ 15307751 (-) False XLOC_009083
TCONS_00017893 lncRNA upstream 419670 15303731 ~ 15304555 (-) True XLOC_009083
TCONS_00017886 mRNA downstream 102689 14776854 ~ 14780602 (-) True XLOC_009078
TCONS_00017884 mRNA downstream 127973 14676120 ~ 14755318 (-) False XLOC_009077
TCONS_00017883 mRNA downstream 128055 14674928 ~ 14755236 (-) False XLOC_009077
TCONS_00017881 mRNA downstream 241105 14630690 ~ 14642186 (-) True XLOC_009075
TCONS_00017880 mRNA downstream 257918 14602520 ~ 14625373 (-) True XLOC_009074
TCONS_00017889 mRNA upstream 337062 15221123 ~ 15230264 (-) False XLOC_009082
TCONS_00017890 mRNA upstream 337360 15221421 ~ 15227541 (-) False XLOC_009082
TCONS_00017894 mRNA upstream 464429 15348490 ~ 15357178 (-) True XLOC_009084
TCONS_00017897 mRNA upstream 561052 15445113 ~ 15449929 (-) True XLOC_009087
TCONS_00017898 mRNA upstream 575913 15459974 ~ 15469096 (-) False XLOC_009088
TCONS_00017882 other downstream 247506 14635669 ~ 14635785 (-) True XLOC_009076
TCONS_00017874 other downstream 567821 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017866 other downstream 689395 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017858 other downstream 800178 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017854 other downstream 1058687 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017891 other upstream 337422 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017896 other upstream 499837 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017917 other upstream 1075315 15959376 ~ 15960468 (-) True XLOC_009094
TCONS_00017936 other upstream 1910050 16794111 ~ 16872600 (-) True XLOC_009108
TCONS_00017944 other upstream 2177516 17061577 ~ 17071246 (-) False XLOC_009112

Expression Profile

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