RNA id: TCONS_00001459


Basic Information

Item Value
RNA id TCONS_00001459
length 1586
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_000917
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 466780 ~ 471925 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacgcacacactcatggATCAGGATCAGCATGATGAGGatgtcaGTGCAGACGCTGAACTGGCGGCTGCCATCATGAAGAGACACTTCCGTCCGTCTCTGATAAAGACAGAAGCGTGGGAAGGCTATGAGTTTGCAGACAAGGAGATCAAGATCACGGAGTCGACGGACTGCTATGGGGCCGTTCTGTGGCCCtcgGCCATGGTGCTGTGTCACTTTTTGGACTCTCATCGCGATCAATACAACCTGCTGGACAAGAAGATCATTGAGCTGGGAGCCGGAACCGGACTCGTTACCATAGTAACCAGCCTCCTCGGAGCACAGGTGACCTCCACTGACCTGCCGGACGTCCTGGCCAACCTGAGGCACAATGTGAATCGTAACACCAGAGGGCGCTGCAGACACGAGCCGCAGGTGACAGAGCTGATCTGGGGTCAGCAGCTGGAGGAGCGATTCCCCCGATACACCTGTCAGTATGACTACATCCTAGCGGCGGACGTGGTGTACGGCCACCCATACCTGCAGGAGCTGCTGGAGACCTTCATACACCTGTGCTCTGACCACACCGTCATCCTGTGGGCCATGAGGTTCCGGCTGGACCCCGAGAACCGCTTCGTCCACACCTTTCAGGAGCATTTCCACCTGGAGGAGCTGTACGACCTGCCCAGCCTCAGCATCAAACTCTACAGAGCACATAAACGATAatacgcacacatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgattccaCATCAGTTCTGTTTACAACTTGATTTTATCTTTTACACTTTGATTTGTGTTGGATGATTagtattaaatgtatattattttacacTACAAGACTGTTGTATAAACATACTATGGTGTtcggttattgtcagataaaagcacagctaaagtagttccagcaaATTTAGagcagctccatatcactccgctAAATGATTAAAGTTATTTCACAGCTAGAACAATCAGAAATCACATCAGAAcacaagaggaggaggaggagatgtggaggacactagtgctacacacaggagcagAAACCTGACTAATGCACTCTCAGACACAACATCTCAGCAGTGGATCTACCAGAGACCAGGagaagggtctggatgcagacctggtgcagtgcaatctgggctgcatccaatgctttttaatggaattacctaaccccacccctaaccctacccgtcattcacaatgacgtcactcactccatttagtgcattgtgtctgacattgcatcgctgagtgatgcaatctcagcttgcatcataaaggctgcatccagatactattggagacCAGAGGAGAAGAGCAATAATCACCTGCGGGATGGTGGATTATAAGTGAATAATGCACACCTGAGGAGCGACAACACTCCACCTCACCACATCAACACCTCAGCTCTGTGTTATATTCTAATCATTCGACAGTCTGTTGTTAATTATTCTGTTTTACAAGTAAAGTCAATGGGAAGTCAGGAGGAATCAAAGCTGTTTTGTACAGAAGTGTCGTGTTTGGAACAATAAATGGTgaactttca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000152684

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001454 lncRNA downstream 120885 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 255967 209129 ~ 210813 (-) True XLOC_000912
TCONS_00002895 lncRNA downstream 265586 199526 ~ 201194 (-) False XLOC_000910
TCONS_00002894 lncRNA downstream 274795 189734 ~ 191985 (-) True XLOC_000911
TCONS_00001446 lncRNA downstream 309247 155770 ~ 157533 (-) True XLOC_000909
TCONS_00001463 lncRNA upstream 7882 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001467 lncRNA upstream 39846 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001475 lncRNA upstream 149065 620990 ~ 622179 (-) False XLOC_000923
TCONS_00003289 lncRNA upstream 306650 778575 ~ 779614 (-) True XLOC_000927
TCONS_00003290 lncRNA upstream 534012 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00001457 mRNA downstream 4615 454315 ~ 462165 (-) True XLOC_000916
TCONS_00001456 mRNA downstream 55449 357518 ~ 411331 (-) True XLOC_000915
TCONS_00001453 mRNA downstream 112614 343292 ~ 354166 (-) False XLOC_000914
TCONS_00001455 mRNA downstream 112665 350840 ~ 354115 (-) True XLOC_000914
TCONS_00001452 mRNA downstream 128335 312784 ~ 338445 (-) True XLOC_000913
TCONS_00001461 mRNA upstream 2160 474085 ~ 494280 (-) False XLOC_000918
TCONS_00001462 mRNA upstream 2362 474287 ~ 481841 (-) False XLOC_000918
TCONS_00001464 mRNA upstream 15264 487189 ~ 493218 (-) True XLOC_000918
TCONS_00001465 mRNA upstream 36960 508885 ~ 513786 (-) False XLOC_000919
TCONS_00001466 mRNA upstream 37147 509072 ~ 513762 (-) False XLOC_000919
TCONS_00001442 other downstream 312934 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 416945 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 422234 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001476 other upstream 149100 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 579016 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 841680 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1398936 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 1402083 1874008 ~ 1885600 (-) False XLOC_000939

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06018839_06023448.mRNA True 767 mRNA 0.52 4 CI01000299 6018839 ~ 6023510 (+)