RNA id: TCONS_00018441


Basic Information

Item Value
RNA id TCONS_00018441
length 5615
RNA type mRNA
GC content 0.48
exon number 33
gene id XLOC_009380
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 33994575 ~ 34056879 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGATGCTTCAGCGGGAGGAGGTGTGTGTGGTCTGGACAGCAGCCCATGAAACACTCGCTGTTTGCCTCAAGACCGCTAAAGACATATCAAATATTTCTTTGCCAGCTTTCAGTTCGcgatttaacttattttgttcCGTATTATCGCTTCGGACACCCCATGAACGTTTTCCTTAAAGGATTTAAATAAGGAAATGCATCTAAACGTGAATGTGGAGTATTGCCTCgctattatatttattgttgtaaAAACTGTCAGCTGTCAGAAAGCGGACCCCCCTGAATGCAGTCAAGGTGGCCATACTGTTCTTCAGAGCCCATACAGGAGCACCAGCTTCAGCTCACAGCAGCTGCTCCAGTCTGCCATGCAGGAGCTCATTTGTGATCATTCACTCTCTCCCGGATGGTATCAGTTCCAGATCTTTGATAAGCCGGCCCGTATGCCCACCAAATGTGTGGAGGTGAATCAATGTGGAACACAAGCCCCAGTGTGGCTTTCTCTGTCTGATGGAGAGTCTCTGCCAGGCTTTCTAGAGGTGAAGCAGATGACAGCCTGTGCTACCTGGCAGTTTCTGGGAAGCGGCAGTAAAGATTGTTGCCTTTTTCGCTTGCCTGTCATCGTACGCAACTGTGGGAACTTCTATGTGTATTTGCTCCAACCAACACAAGGATGCATGGGATATTGTGCTGAAGAGATATCAGATGCCAGTCAAACTGACTGTGAAGGCAAACCAAGGAATAGTGATGGAACTTGCAGTGATCCACAGCCCCCATCTGCTGCAGTACCATTAATAGTATCTGAGCTTTTGGGCAGCAGTGTGTACCTGAGGTGTACGTTTGCTGACAGTAATGCAACCAGCTCTATGGGATATATTGTGACATGGTGGCGACTCTCTCCCGAGGGCAACAGAGAAGAGCTCAGGACAGACACTACAATAGAAACCTTCGCTTTCATTGAGCTGGATGGCATCAACCTGCGACTGGGAGACAGAGTCCATTGCAGTTGCATTAGCTTTTTTCTGGAGTCTCCTGATATACAAAGCCTTCCATTGGAGAGTGAAGAGTTTTATGTAGGAATTCAGATGAAGCCACAATCCGTCTTTATTTCGGAAGATGGGAAAGAGTATAAACTGACGGTGGAGAGCACTGTGCCTTTACCATGCTCCTTGGAGAGATGTGTTTTACCTTTGCATCTTACTACAAGTAGTCAAGGTGAGAAGGAGCTGGGTGTTGATTTAGTCCTGTCCTCCTGTGAAGTCGAGCTTTCTCAAATCCCATGTAATGAAGGTGTGTGTAGTCGAGCATCTGTCCTCTACAGCGCAGTGACGGATATATGGAGGGATGGAAACAGAAGCACTGAAATACACATTAAACCCATAATCAGCACCAACTTCCTGTGGAATGGATACACTCCTCAAAGTGTGCAGATTCTTGTGCAGGATGTCCCATCTGCTCACTGTTACACTTTTACGGATCCTCATATCATTACATTTGACGGCAGGAGGTATGATAACTATCAGATCGGTACATTTGTGTTGTACTGGAGCACCGGTCGGCCATTTGAGGTGCATGTTCGACAGTGGGAATGTGCCGGCAGGACTGCTCATCCCACCTCATGTGTCTGTGGCTTCGCTGTCAGAGACGGACCGCACGTCATCACATATGACATGTGTAATGGACTGGCAGGAGAAACGAAACCACGGCTCTCTGTGAAGAACGGAGACATGGAAAAAAGTGGCATCCGTGTCTTTGAGTCCTACCAGGGCCGCAAAGTCACTGTTACGTTCTTGTCTGGGGCTTTTGTGCGTGCTGATGTGGCTGACTGGGGAATTAGTGTGACTGTACGGGCTCCGGGCTCTGATAAAGGACACACCGAAGGCCTGTGCGGGACCTTTGATGGACAGTCGATGAATGACTACCATACAAAAGGTGGAGAGACTGTGGAGGACAGTAGATCTTTTATCAATGCATGGAGGTTGGCCCCCAGAACAAGCTTGTTTGACAAAATCCCGATCAATGCAAGCAACTCCAGTCTGCATAATTACTGCCAATGTCAGCAAGAGAAACACCAATCATCCGACTCTTCCTCAAAGTGTTCATTATCCACCCTCAGCCGCTATTCCTCCATCATCCCTGCAATGGACGTCACATCCCAATACATCAGAACCACTCACAGCAGGCCTGTCCAACACCGTCCATCCCAGGGAAGCAGATACCAAATCCACAGACGCATCACAAATCCCCAAAGACCCCACAATCAAAGACGTGTCGTAAACCCAAACAGATCTCAAAAACGTCAGAAACGCCAGAGCCGCCAATTCCACTCTAGATCTTCTCCAAACCTCCAGGAGTCTGCATATAATTTCCCAGAAGACCATTCTTTGTGGGTTTCTCCTGATGCGCTGGTGTTTTCCTGGCCTACTGAATCAGGTCTGACTGAACGTGAGGCTCGGAGGCTCTGCGAGAGCACTTTGAGGAACTCCACGGTTGGTTCTGGTTGCTGGAGTCTGCTAGGTAAGGTGATTGAGCCGGCGGTGGAGATGTGTGTGGTCGACCTGCAGCTTAAAGACGACCAGGCCTGGGTTGGAGCCACTGTAGCGTTGCTGGAGAATGAATGTGAGAGGAGGCTGCTAGAGGAGGTCAAGTGGAGGAAGGAGAACAGGGATGTTCTGGTTTCACTGAAGTGTCCCAGCCTGTGTAGTGGGAATGGACAGTGCACAGATTGGGGATGCTCGTGCTTCCCTGGGTTTGGATCCTTTGATTGCAGCCAAATAtccgATGAGACTCCAGAGATTACCGAACTGGAGAATGGAGGACTTTGTGATGTCCAGTATGGAGTCTGTTCATCTGTTAAAGTTTTTGGTCAAGGATTTAAAAAGTCCTACAAGCTCAAGTGTGAAGTTGTGAAGGAAAAGATAGTAGATAGCGAATGGTCTTTGGATGATGCCCGACTGGTGCCAGCCTCTTTCCAGAGTTCATCAGCATTAGAGTGCCAGATCCCTGCAGATCCCTCCACCACCGCACACCAACCAGTCCTACGCTGGCAAATCAAGGTGTCTAATGATGGACACAGCTTCAGCAATGCAAAGATTTTGACTCTTTTTGATGGGACATGTCAGATTTGCACAGTCAGCTCCACGGTTATCTGCACACTAAAGAACAGAACGTGTAGTATTGACGGAGTGTGTTTTGGAGAGGGAGATCACAGCCCAAACAGCCCGTGTTTGACGTGCAGACCGGATCTTTCCAAATACAGCTGGTCCATCGCTGAGAAAAACGAGCCGCCTGTGTTTCACCCGGGTCAATCCACTCTGAAGGCTTTCTCCGGAGAGGATTTCGTCTATCAGTTTTCAGCATCTGATCCGGAGGGCTCTGCGGTTTTCTTCACGCTCCGCTCAGGGCCCAGGGATGCGCTTCTCTCTCCAGCTGGTCTGCTCATCTGGAAAGCTCTGTCCAGCACACCGGTGACCTTAGACCTGGCTGTAACTGATGACTGTAATGCTGTGACACAAGCAGCAGTGAAGGTGTCAGTTGACCCATGTGACTGTCAGAATGGAGCGTCCTGTGTGACCAACATGAACTTCCCCCCGGGGTCTGGTGAATACCTGTGTGTTTGTCCTGTTGGTCTGGAGGGGCTCAAGTGTGAAACCGATGTGGATGACTGCAGGTCAAACCCGTGTCTCTCAGGAACTTGTGTGGATGCATTAAACTCCTTTACCTGCCAGTGTTCAGAGGGCTTTACAGGTGTGATCTGCGATGAGGATATTGATGAATGTTTATCATCTCTATGTTACTCTGGGGTTTCCTGCAGAAACACGGTGGGCTCGTTTGTGTGTGGACCCTGTCCTGACCAACTCATTGGAGATGGGATGACCTGCAAACaaaaGACAGTGGACAAAATTAATGAAGGCACACATGAAATCACCTTAGAAAGTGTGGTTAAACTCAACTCCTTCAAACCCAAGCTTATACCagGCAAGAGCCCATGTACCAGTCGGCCCTGTTACCCTGGAGTCCAGTGTTTCGAGAGCACATACACCTCTGCTGGATACATTTGTGGTCCATGTCCACCTGGACTCAACGGCAATGGACAAACATGCATGTCAAGGACAGCAAACAGGCAGACTCCATTAAAGGAGGACGGCAAGCTCTCTGATGTCACTTCCTCTTTGGTCACGCCTTATTCCACCAGAAAGTCAGCTGAATTTCATGCTGAAGCGGACAGATCTTCTGCCAGCAGCAGGTGGAGCTCACCTGTTGATAGAAGGACCATCACAAACTTAGACCGGAGCACCACAAAAACTAAAGACAACCAAAGTTCAACCAGTAAGCAGTCACATGAAGAGGAGTTAAACCCTAAAGACAACCGAACGTGTGTGGATTCACCCTGTTTCTCTGGTGTGGTGTGTGACGACACTTCCTCTGGCTCCTTCAGATGTAGAGACTGTCCAAATGGATATGAAGGAAACGGAATAACTTGCAAGCCAACATGCCGTTATCCTTGCGGTCAGAATATGGAGTGCTCACAGCCAAACACGTGTACCTGTAAAGAGGGTTACACTGGATACAACTGCCATATCGCCGTGTGTCGACCAGACTGCAAAAACAAAGGAAAGTGTGTAAAGCCCAGCGTGTGTGAATGTCCTTTAGGATACAGCGGACAAACCTGTGAGGAAGCCATCTGTGATCCGCCTTGTCAACATGGTGGCCGATGTTTGTCCAGAAATCACTGCACTTGTCCATATGGCTATGTGGGACCGAGATGTGAAACTATGGTGTGCAACAGACATTGTGAAAATGGTGGAGAGTGTGTGTCTCCTGATGTCTGCAAGTGTAAACCTGGCTGGTATGGACCGACATGCAACTCAGCCGACTGTAAGCCAGTGTGTTTAAACGGAGGGACATGTCTGAAACCAAATGTATGTGTTTGCCCCAGTGGCTTCTATGGTTCACAATGCCAGATAGCTCTTTGCAATCCGCCATGTAAAAACAGAGGCCAGTGTATGAGAAACAACGTTTGCTCCTGTCCTGAAGGATACACTGGGAAGAGATGCCAGAAAAGTGTGTGTGACCCCATGTGCTTGAACAACGGGAAGTGTGTCGGCCCAAACACCTGTTCCTGTCCATCTGGATGGAGAGGAGGGATTTGCAACATCcctgtgTGTTTACAGAAATGCAGGAATGGTGGAGAGTGTGTTGGGCCGAACACCTGCCACTGTCCAGCTGGATGGGAGGGTTGGCAGTGCCAAACTCCGATCTGTAAGCAAACATGCCTGAATGGAGGCAGATGTGTGTTCCCTAATTTCTGCCATTGCCGTCAAGGTTACACTGGACCTTCTTGTGGCACTAAAaCCAGGTGATGAAGACGTGACATTGAAGAGATATATATAAGAAATTGAAATGCTGTTTATGAGTAAATGCTGTTGTATTTGTGccctaaaagtaaagtaaagcttatttttagggtttttttaCCTTAGATTACTACAGTGTTTCATGAGTAATGTGTGTTGGTTTTTAAATGTCGCATAGCTCTGAAAATGAAtgctttttgtttaattgttggtTTAGTGTGCCTTTTCTcaataaaaagaaaagtgtttgaccacaaaaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-540 Predicted to enable calcium ion binding activity. Orthologous to human VWDE (von Willebrand factor D and EGF domains).

Ensembl:

ensembl_id ENSDART00000170130

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018440 lncRNA downstream 29664 33957926 ~ 33964911 (-) True XLOC_009379
TCONS_00018427 lncRNA downstream 106908 33879353 ~ 33887667 (-) True XLOC_009376
TCONS_00018426 lncRNA downstream 107212 33875205 ~ 33887363 (-) False XLOC_009376
TCONS_00019210 lncRNA downstream 107225 33879353 ~ 33887350 (-) False XLOC_009376
TCONS_00018425 lncRNA downstream 108422 33868661 ~ 33886153 (-) False XLOC_009376
TCONS_00018835 lncRNA upstream 411650 34468383 ~ 34478448 (-) True XLOC_009385
TCONS_00018836 lncRNA upstream 545789 34602522 ~ 34607406 (-) True XLOC_009389
TCONS_00019211 lncRNA upstream 602148 34658881 ~ 34668392 (-) True XLOC_009390
TCONS_00018496 lncRNA upstream 1357733 35414466 ~ 35661368 (-) False XLOC_009404
TCONS_00018837 lncRNA upstream 1359891 35416624 ~ 35661131 (-) False XLOC_009404
TCONS_00018436 mRNA downstream 29135 33937756 ~ 33965440 (-) False XLOC_009379
TCONS_00018438 mRNA downstream 29653 33939069 ~ 33964922 (-) False XLOC_009379
TCONS_00018437 mRNA downstream 29675 33939065 ~ 33964900 (-) False XLOC_009379
TCONS_00018439 mRNA downstream 29678 33951892 ~ 33964897 (-) False XLOC_009379
TCONS_00018435 mRNA downstream 60755 33891996 ~ 33933820 (-) False XLOC_009378
TCONS_00018445 mRNA upstream 115638 34172371 ~ 34214440 (-) False XLOC_009381
TCONS_00018446 mRNA upstream 120431 34177164 ~ 34213990 (-) False XLOC_009381
TCONS_00018447 mRNA upstream 120456 34177189 ~ 34213898 (-) True XLOC_009381
TCONS_00018448 mRNA upstream 159063 34215796 ~ 34322915 (-) False XLOC_009382
TCONS_00018449 mRNA upstream 163056 34219789 ~ 34322915 (-) False XLOC_009382
TCONS_00018421 other downstream 260469 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 331403 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018399 other downstream 1931166 32063292 ~ 32063409 (-) True XLOC_009362
TCONS_00018396 other downstream 2446723 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018378 other downstream 2632434 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018452 other upstream 222688 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018481 other upstream 1038472 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018488 other upstream 1110562 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018513 other upstream 2472732 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018517 other upstream 2817518 36874251 ~ 36874366 (-) True XLOC_009420

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000095_01983843_01999514.mRNA True 4083 mRNA 0.50 20 CI01000095 1983834 ~ 1999514 (-)