RNA id: TCONS_00018837


Basic Information

Item Value
RNA id TCONS_00018837
length 3502
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id XLOC_009404
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 35414466 ~ 35661368 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cattttcATAAATTCATAACGATGGTCAAGTctcaattaaacaacataaaacgtTTAATGAAAACGTTTTACAATAGTCATTTACCCGAACAGTGATTAATGCGTCttcatttaaaacacaaaagaCCGGGCGCCTTGGACGCTCGAGACTGCTTCATTATAATTAATGTCTCCGGTTCCTCGTGCACCCGGAGGTCGCGAATAGCTCCGTCCCGCGCCCACTGATCTCTGAAGATCTGACACGAGAGGGATCTCGCCGGCTATTGCAACCTGACAAGATCTGTAATACTTGGGTGATGAATCGTTCCAAACTTTTTTGACGATGCTGGCAGCTCGGGGCTGTGCGCATGTGCGAAGGTGTCCAAACTGACAATGCTGGAGAGATAGTGCGTCTGGGATTGAGAATCACAGAGAAAAAGgacagaggaaaaaagaaaaaggaggaAAAGATTCGAGAAAAAATCCGACGAACCCACGCCGAAAGACGGGCATCATGAGGTCCAAAGGCAGGGCAAGGAAACTGACCACTGGAGATGGAGAGGACTTTTCTGTTTTTGCCTCTGATGACCTGGAAGAAATTGGTGGAGTGTCTGATGCAGATCTGCTCCCATTGGCCCCTGTTGATGATCTTCCCTCTCCCGGCCTATCGGGTGATGCGGTTTCCCCAGTCACCCCTTCTCCCTACTACCCATCGTTCCACACTTCAATGTACCAACCCAACGATGCGGTCGAAGCGGTTCCCCCAGACTTTGAGCTCCGTGAGTCTGCCGCTTTCAGAGGAAACCTGGGTGTCTGGACCCGCAGGAGACTGGAGGTGGGAGAACGTCTGGGACCCGATGAGGGAACGTCAAGACACAGCCTGGAAAACGCCACCCAGGGATGGGAGggtGAACAGGCAGGTTTGGATGGGAGCGTGTGTGATAGCAGGAGCTGGCTAAGGCACGTCCAGATCTCACCATCCACCCACCAACACAACCTCACAGCCTGCCAGATACATGAGCAGCGTGAAGGACCACAGGCcaggatcacacacacactctctcggtCAAGCATGAGGATAATCACACATTTTGTATCTTTGCACTCGGATATGGGGGACGACAAATTCCTGAATCCTTACGGAGtgaaagacagagaaagagacTCTGAGAGAGAAAATTACATCCATACATTCACAGCTTTTGTTCTATGACTTATTTGCACACAACAACTTATTTGCACTTTAGCTGATTGCTCTTTAAGGGTCAAATAATTTCTTCAAGGTTAGGTTTTACTCACTTTGGCATGTTTTATAGTTAAACTATTGAAATGTTTACAACTGAGAACTTTTTATGCTCGCATTTGAGGAGAAACTGGATTAAATGAAGTTTCATTGAGTTATAGTGAACTGAGTTTTGGTGGATTAAATTGAGTAAAGAGGGTTAAGTCAAGTTGAGTTGGGTTGAGCTGGATTAAACCTACTTTTATTGACTTGAGTTGAACTGGAATTAATTTAGAGAAAATCTACTTTATACATTTTTGGCCTTTACGCTTGCATGTGAGGGACTGCAAATTTCTAAATCATTATGAAATGAAAGACTGATCTTGAAAGAATTAAACTTTTGGTTCACATTGGAGGAAAAACAAGTAGTCAGACTGGATTAAATAGAGTTTTGTTGATTTATAGTTAAGTGAGTTTGACTGGATTCATTTAGATTGTAAACCGTATTGAATCTAAATTGAATTGTCAATAAATCAACTTCCTTTTATCTGGAGATAACTGAGTTAAATAGGTTTAAGTCAAGTTGAGCTGGATTAAACATACTTTCATTGAGTTGAGTTGGACTGGAATTAATTTAGAGAAAATCTATTATACATTTTGGGCCTTTACACTTGCATGTGAGGGACTGCAAATTCCTAAATCATTATGAACTGAAAGACTGATCTTGGGAATAAGGTTTTATCCCATTCTGGACACAGAGTTTGATTGTTTCCTCATTAAGggttttttattttggtatgtaAAAAGgatcaattattaacatttacaatTAAACATTTGCTTTTTGTTCACATTGGAGGAAAAACAAGAAGTCAAACTGGATTAAACAGAGTTTCATTGACTTATAGTGAAGTGAGTTTGACTTGTTTCAGTTAGATTGTAAACTGTATTGAATAAAAATTGAAGTAGGAATAAATTGACTTTCTGTGATCTGGAGTAAACTGAGTTGAATAGGGTTAAGTGAAGCTGAGCTGAGTTCAGTTCAAATGAGCTGAGCTGGATTAAATCTACTACTTTAATCTAAATCTGGATTTAATCTACTCTTCTACTTTTTTTGAGTTGAGTTGGACTGGAATTAAACGGACTGGCATAAATTCTGAGACAAAATGTTGTATCTTTGCACTGGGATATATAAGGGTTGATAAATTCCTAAATCCTTTAAAACTGTGGCAATTCAGATTCAGAGCTTATCTGTAACATTTACTGATTAAATGATTCCCGCAAGGTTATTTTGTGAAAATGTGTGCATGTTTTAAATGCTAAATTAGTTTacctaataaaatgtaaaagcttTTTGTGTTCATATTTGAGAAAAGAGTAAGTAGTCAAACTGAGTTTCACTGAGCACTCAACaaaatgatgataatattttttgctgcttgttaaaaaACTACTTACTtagaatgagctgaaacaacacaattcctgagatttttggggacaacttaattgttttatgttcaattcacttaagtCTGTCAAAAAcatttaacttaacttaattggtttgtgttgggacaacattaatgaatattgcggaagcctgcattttttacagtgagtgTTGACTAAATTCAATTGCAAACTCAGTTCTTTAAACTTATTCAGAAattcattgaattgaattgaaattggaATATATTGAGTAAAAAAAGGGTCCAATTGCACTTtgtaaaactacttatttagaatGAGACGAGGATTTTAGTCGAGTTTAGTTGAGTTTGACTTTAGTATAAGTTTTATCCGTTATTCTGTAAGTTGCAAAATAGGGCTGTACACATCAGCAATAGTCACAATGTTGAGGTGGGATTATAGTTGACTAAGAGCCACAGTTGAGTTGACACAAAATTTATGGGTTCATTGCAAAGTTTGACCATAAAGTTACCCAAAAACATTATCATGTTTATGTGTTTTTAAGATTGTGTAAgaatttaaagcattcaggcacaagaaattaCATCCTGTATGTAACTTTAAGAAAGATTCATTGTATTTACTGTAAGTGTATATATactacaaaaattattttacagttgattattcaatttctgtgccTGAATACTCATAGACTCCCAGAAAAACactgtggtggtggtggtggtggtggtgtttttttatttgtatctttgcTCAGCTGATTTGATCAATGCTCATGATTGGTTTATTCAAAGATATCTTTTGGCAATTCGTAACTAATTGATTTAGTCAAATTTGTaggatctcattcatacaatttag

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019211 lncRNA downstream 748232 34658881 ~ 34668392 (-) True XLOC_009390
TCONS_00018836 lncRNA downstream 809218 34602522 ~ 34607406 (-) True XLOC_009389
TCONS_00018835 lncRNA downstream 938176 34468383 ~ 34478448 (-) True XLOC_009385
TCONS_00018440 lncRNA downstream 1451713 33957926 ~ 33964911 (-) True XLOC_009379
TCONS_00018427 lncRNA downstream 1528957 33879353 ~ 33887667 (-) True XLOC_009376
TCONS_00019215 lncRNA upstream 100550 35761681 ~ 35886373 (-) False XLOC_009407
TCONS_00018498 lncRNA upstream 118909 35780040 ~ 35780805 (-) True XLOC_009408
TCONS_00019216 lncRNA upstream 203452 35864583 ~ 35885893 (-) False XLOC_009407
TCONS_00019217 lncRNA upstream 203452 35864583 ~ 35886198 (-) False XLOC_009407
TCONS_00018838 lncRNA upstream 213766 35874897 ~ 35885971 (-) True XLOC_009407
TCONS_00018495 mRNA downstream 5764 35403080 ~ 35410860 (-) True XLOC_009403
TCONS_00018494 mRNA downstream 10060 35372907 ~ 35406564 (-) False XLOC_009403
TCONS_00018491 mRNA downstream 164076 35226673 ~ 35252548 (-) False XLOC_009402
TCONS_00018499 mRNA upstream 227418 35888549 ~ 35930070 (-) True XLOC_009409
TCONS_00018500 mRNA upstream 290757 35951888 ~ 36055401 (-) False XLOC_009410
TCONS_00018501 mRNA upstream 295711 35956842 ~ 35960250 (-) True XLOC_009410
TCONS_00018502 mRNA upstream 567704 36228835 ~ 36249087 (-) True XLOC_009411
TCONS_00018503 mRNA upstream 668237 36329368 ~ 36347858 (-) False XLOC_009412
TCONS_00018488 other downstream 204387 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 303838 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018452 other downstream 1137089 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018421 other downstream 1682518 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 1753452 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018513 other upstream 868334 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018517 other upstream 1213120 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018535 other upstream 2066703 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018590 other upstream 4407880 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 5732270 41393401 ~ 41396073 (-) True XLOC_009478

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000095_03034508_03067922.mRNA True 2132 mRNA 0.46 4 CI01000095 3034270 ~ 3069186 (-)