RNA id: TCONS_00018495


Basic Information

Item Value
RNA id TCONS_00018495
length 579
RNA type mRNA
GC content 0.54
exon number 5
gene id XLOC_009403
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 35372907 ~ 35410860 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgtgtgtttgtgtgtgcccaTATCATTCACCCCACGGCCCCTCGCGCCACGAGCGCCAGTACCGCTGTGAGGACTGTGACCTGAACTTTGAGTCTGGTTCGGAGCTGTTGGACCATCAGAAACACGCGTGCGGGACTCCTCCATCCTCTGGCTTCAAGTTGTCTAAGCAGGGTTTGCCCAGCGAGTGCAAAGAGTGCGAGCAGGTCTTTCCTGATGCCCAGAGTTTGGACACTCACTCTCTGTCTCACTCGGACGAGCGGGAGTACAAGTGCGATCAGTGCCCGAAGGCCTTCAACTGGAAATCCAACCTGATTCGCCACCAGATGTCACATGACAGCGGCAAGCACTATGAATGTGAAAACTGCTCAAAGCAGGTGTTCACAGACCCCAGTAACTTGCAGAGGCATATCCGCTCTCAGCACGTAGGGGCGCGAGCTCACGCCTGCCCCGACTGCGGAAAGACCTTCGCCACCTCTTCAGGCcttaaacaacacaaacacatccaCTCTTCCGTCAAGCCCTTCATATGTAAGTCACTCAGACCCTTCATATGTAAGTCTGCATGCTTTCTACTCTGA

Function

GO:

id name namespace
GO:0035776 pronephric proximal tubule development biological_process
GO:0035777 pronephric distal tubule development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048793 pronephros development biological_process
GO:0072196 proximal/distal pattern formation involved in pronephric nephron development biological_process
GO:1903251 multi-ciliated epithelial cell differentiation biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0098508 endothelial to hematopoietic transition biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko00310 Lysine degradation
ko04010 MAPK signaling pathway
ko05200 Pathways in cancer
ko05220 Chronic myeloid leukemia
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050208-123 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including embryonic cranial skeleton morphogenesis; endothelial to hematopoietic transition; and pronephric nephron development. Predicted to be active in nucleus. Is expressed in several structures, including brain; dorsal aorta; head; mesoderm; and pronephros. Human ortholog(s) of this gene implicated in myeloid neoplasm. Orthologous to human MECOM (MDS1 and EVI1 complex locus).

Ensembl:

ensembl_id ENSDART00000191267

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019211 lncRNA downstream 734688 34658881 ~ 34668392 (-) True XLOC_009390
TCONS_00018836 lncRNA downstream 795674 34602522 ~ 34607406 (-) True XLOC_009389
TCONS_00018835 lncRNA downstream 924632 34468383 ~ 34478448 (-) True XLOC_009385
TCONS_00018440 lncRNA downstream 1438169 33957926 ~ 33964911 (-) True XLOC_009379
TCONS_00018427 lncRNA downstream 1515413 33879353 ~ 33887667 (-) True XLOC_009376
TCONS_00018496 lncRNA upstream 3606 35414466 ~ 35661368 (-) False XLOC_009404
TCONS_00018837 lncRNA upstream 5764 35416624 ~ 35661131 (-) False XLOC_009404
TCONS_00019212 lncRNA upstream 7644 35418504 ~ 35421844 (-) False XLOC_009404
TCONS_00019213 lncRNA upstream 7644 35418504 ~ 35422791 (-) True XLOC_009404
TCONS_00018497 lncRNA upstream 29880 35440740 ~ 35468800 (-) True XLOC_009405
TCONS_00018491 mRNA downstream 150532 35226673 ~ 35252548 (-) False XLOC_009402
TCONS_00018493 mRNA downstream 150558 35227378 ~ 35252522 (-) True XLOC_009402
TCONS_00018492 mRNA downstream 156338 35227219 ~ 35246742 (-) False XLOC_009402
TCONS_00018490 mRNA downstream 178599 35214546 ~ 35224481 (-) True XLOC_009401
TCONS_00018489 mRNA downstream 178907 35214546 ~ 35224173 (-) False XLOC_009401
TCONS_00018499 mRNA upstream 477689 35888549 ~ 35930070 (-) True XLOC_009409
TCONS_00018500 mRNA upstream 541028 35951888 ~ 36055401 (-) False XLOC_009410
TCONS_00018501 mRNA upstream 545982 35956842 ~ 35960250 (-) True XLOC_009410
TCONS_00018502 mRNA upstream 817975 36228835 ~ 36249087 (-) True XLOC_009411
TCONS_00018503 mRNA upstream 918508 36329368 ~ 36347858 (-) False XLOC_009412
TCONS_00018488 other downstream 190843 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 290294 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018452 other downstream 1123545 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018421 other downstream 1668974 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 1739908 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018513 other upstream 1118605 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018517 other upstream 1463391 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018535 other upstream 2316974 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018590 other upstream 4658151 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 5982541 41393401 ~ 41396073 (-) True XLOC_009478

Expression Profile

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